Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq95845 136 6e-27
seq85480 120 4e-22
seq15580 104 3e-17
seq88024 102 1e-16
seq124007 98.7 1e-15
seq50102 87.8 3e-12
>seq95845
Length=12527
Score = 136 bits (150), Expect = 6e-27
Identities = 110/133 (83%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||| ||||| ||||| |||||||| || || |||||||||||||| | ||
Sbjct 947 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATGGAC 888
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||| ||||||| || ||||||||||||||||| ||||| || || | | |||||||
Sbjct 887 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTA 828
Query 75842 TTTCTGAGACCAT 75854
||||| | |||||
Sbjct 827 TTTCTTATACCAT 815
>seq85480
Length=19824
Score = 120 bits (132), Expect = 4e-22
Identities = 101/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| ||||| | |||||| ||||| ||||| |||||||| ||||| || || |||
Sbjct 17791 TCATCTCTGCTAATAAGTTCGTTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 17732
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
||||| ||||| | || ||||| ||||||||||| || |||||||| || || || ||
Sbjct 17731 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAGCT 17672
Query 46774 ACAA 46777
||||
Sbjct 17671 ACAA 17668
>seq15580
Length=3375
Score = 104 bits (114), Expect = 3e-17
Identities = 90/112 (80%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711
|||||||||| || || | ||| || ||||| |||||||||||||| || || | || |
Sbjct 3262 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTTTTCT 3321
Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGC 46763
| | ||| |||||||| || |||||||| || ||||| || |||||||||||
Sbjct 3322 TTAACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGC 3373
>seq88024
Length=2735
Score = 102 bits (112), Expect = 1e-16
Identities = 233/344 (68%), Gaps = 19/344 (6%)
Strand=Plus/Plus
Query 44363 TCCCGTTGATCCAAATCCT--TGAGCGTCTCTATTGGTACTATCTAGAGATTGTACTTCC 44420
||| || || ||||| ||| ||| | | || || || ||||| | ||| ||||||
Sbjct 1808 TCCAGTGGAACCAAAACCTCCTGAAC--CCCTTTTAGTGTAATCTAAAACTTGAACTTCC 1865
Query 44421 TCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCTGTATTT 44480
|||| ||||| ||| | || |||| | | || || || || |||| |||||| | ||
Sbjct 1866 TCTATTTCAGGGTAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 1925
Query 44481 ATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCCCCTATAATCT 44540
| || ||| | ||||| ||| ||| | || | || || || || || || ||||||
Sbjct 1926 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCCATATTTCCTCTGTAATCT 1985
Query 44541 TCATCTATTACTCCACCTCCCACATCAATACC---TTTTAGAGAAAGACCCGATCTAGGC 44597
|| ||||| || ||| |||| ||||| || |||| || | || || | ||
Sbjct 1986 TCGTCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGTAGCCAATCCAGAACGTGGA 2045
Query 44598 GCTATTCTTCCATAA----CAGAATTTTGGCATAGACATACGAATATCTGTTTTAATCAA 44653
|||| |||||||||| ||||| || | || || |||| || ||||| | |||
Sbjct 2046 GCTACTCTTCCATAACACCCAGAA----GGAAGAGCTATTTGAATGTCGGTTTTCA-CAA 2100
Query 44654 CCGTCTTTCTCC--AGGAGGGATAGTATAATCGTAAGCACTGTA 44695
| ||||||| ||| || || || ||||| || ||||||||
Sbjct 2101 -GGATTTTCTCCATAGGTGGTATTGTGTAATCATAGGCACTGTA 2143
>seq124007
Length=20016
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| || ||||| || | || ||||| || || || ||||| | |||||||| || |||
Sbjct 7188 GTACCAGCATTGAAGAGAGTGGGAGAGGCGTGGGTAAACCACCTCTCAGAAAGAAGGTTG 7129
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
|||||||||||| | || || ||||| || |||||| || |||| || | |||||||
Sbjct 7128 TATGTTTCAATAGCAGCATCAATATCTTCTTTATGAATCCCCACAGATACCCTCATCAAC 7069
Query 77114 ATATGCTGAGGTCGTTC 77130
||||| || |||| |||
Sbjct 7068 ATATGTTGTGGTCTTTC 7052
Score = 91.5 bits (100), Expect = 2e-13
Identities = 119/162 (73%), Gaps = 2/162 (1%)
Strand=Plus/Minus
Query 75986 GCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT- 76044
|| || || || || || || || || || |||||||| ||||| || || | ||||||
Sbjct 18888 GCCAGATCACAGCTGGCTTCCAAGGCTCCATAATAAATGGTTTCAAAGATTTGCTTATTC 18829
Query 76045 AAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAG 76104
|| | || | || || |||| ||||||||||| | |||||||| |||||||| ||
Sbjct 18828 AATAACTGG-GCCTCTGGACTCTCAAAAGGATACCTCATCAGAATAAAAGCATCTGCCAG 18770
Query 76105 TCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA 76146
|| || |||||||| ||||| || | ||| | ||||| ||
Sbjct 18769 ACCTTGTACTCCAATTCCAATGGGGCGATGGCGTTTATTTGA 18728
Score = 86.0 bits (94), Expect = 9e-12
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579
|||||||| ||||||||||| ||||||| ||||||||| ||||| ||||||||||| |||
Sbjct 14608 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAAAGAC 14549
Query 76580 CA 76581
||
Sbjct 14548 CA 14547
>seq50102
Length=6035
Score = 87.8 bits (96), Expect = 3e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186
||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| |||||| |
Sbjct 3782 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 3723
Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212
|| ||||| ||||| || |||||||
Sbjct 3722 GTACTGGATTGGAAAGATGACAAATC 3697
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 711504075360000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |