Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq63810 131 4e-25 seq48881 118 2e-21 seq5492 96.9 8e-15 seq157463 93.3 1e-13 seq33159 87.8 4e-12 seq90327 84.2 5e-11 seq12448 84.2 5e-11 >seq63810 Length=35167 Score = 131 bits (144), Expect = 4e-25 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || ||||| |||||||| ||||||||||| |||| | ||| Sbjct 27693 CTGAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTG 27752 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || ||| ||||| ||||| | || ||||||||| | | ||| || Sbjct 27753 CGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCC 27812 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || ||||| || || |||||| |||| | | |||| ||| ||| || || Sbjct 27813 TCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCC 27869 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || | ||||||||||||| |||||| Sbjct 27870 AGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27913 Score = 125 bits (138), Expect = 2e-23 Identities = 163/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || ||||| ||||| || ||||||||||| |||| | ||| Sbjct 27465 CTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 27524 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || ||| ||||| ||||| | || ||||||||| | | ||| || Sbjct 27525 CGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCC 27584 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || ||||| || || |||||| |||| | | |||| ||| ||| || || Sbjct 27585 TCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCC 27641 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || | ||||||||||||| |||||| Sbjct 27642 AGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 27685 Score = 123 bits (136), Expect = 6e-23 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | |||||| || || ||||| ||||| || ||||||||||| |||| | ||| Sbjct 27921 CTGAGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 27980 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || ||| ||||| ||||| | || ||||||||| | | ||| || Sbjct 27981 CGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCC 28040 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || ||||| || || |||||| |||| | | |||| ||| ||| || || Sbjct 28041 TCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCC 28097 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || || | |||||||| |||| ||||||| Sbjct 28098 AGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 28142 Score = 113 bits (124), Expect = 1e-19 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| ||||| ||||| || ||||||||||| |||| | ||| | |||||| Sbjct 27246 AGGACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCT 27305 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||| ||||| | |||||||||||| | | | | || || || ||| Sbjct 27306 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGCTGCCCTCTTTGTCT 27365 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || || || || || Sbjct 27366 TGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 27422 Query 152070 GTTTTGCCCGT-GAGAGTCTTCACGAAGACCTGCAT 152104 | | || || ||| ||||||||||||| |||||| Sbjct 27423 GACTGACCGGTCGAG-GTCTTCACGAAGATCTGCAT 27457 >seq48881 Length=14873 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || |||||||| ||||||||||| || | | ||| | |||||| Sbjct 7402 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 7461 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| || ||||| || Sbjct 7462 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 7521 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| |||| | | |||| ||| || || || || || || Sbjct 7522 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 7581 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||||||| || ||||||||||| | |||||||| Sbjct 7582 TTGCCCGTCAGGGTCTTCACGAAAATTTGCATTTT 7616 >seq5492 Length=9153 Score = 96.9 bits (106), Expect = 8e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | |||||||||||||| ||||| ||||| |||||||| || | ||||| | | Sbjct 3819 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTGCAC 3760 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| | || || || ||||| || || ||||| || | | ||||||||| Sbjct 3759 CCATCTTCCCGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 3700 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | ||| | || | || || || || || Sbjct 3699 TTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGTTCAACCTCGAGGGTG 3640 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || || || |||||||| | |||||| || Sbjct 3639 ATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTT 3599 >seq157463 Length=7943 Score = 93.3 bits (102), Expect = 1e-13 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | |||||||||||||| ||||||||||| |||||||| || | ||||| | Sbjct 343 AGTCTCAACACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCTGACAAAGTACGT 402 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| | || ||||| | | | ||||||||| Sbjct 403 CCATCTTCCAGCTGCTTGCCAGCAAAGATCGGTCTTTGCTGAGCAGGAGGAATTCCTTCC 462 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || | || || | | | |||| | | || || || |||||||| Sbjct 463 TTATCCTGGGTCTTGGCCTTTATATTTTCTATTGTACCCGAGGGTTCAACCTCAAGAGTG 522 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || || | |||||||| | |||||| || Sbjct 523 ATGGTCTTCCCAGTAAGGATTTTCACGAAAAGCTGCATCTT 563 >seq33159 Length=15523 Score = 87.8 bits (96), Expect = 4e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | |||||||||||||| ||||| ||||| |||||||| || | | ||| | Sbjct 2101 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACACAGTGCAT 2160 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| || || | | | || | | ||| ||||| Sbjct 2161 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTACAGATCAGGAGGAATTTCTTCC 2220 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | |||| | ||||| || || || || || Sbjct 2221 TTATCCTGTATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAACCTCGAGGGTG 2280 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || || || ||||| || | |||||| || Sbjct 2281 ATGGTCTTCCCAGTAAGGGTTTTCACAAAAATCTGCATCTT 2321 >seq90327 Length=63722 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 151899 AGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGG 151958 ||||||||||| ||||| |||| |||||||| || | || || | |||||||| || Sbjct 54690 AGATGAAGAGTGGACTCCTTTTAAATGTTGTAGTCAGACAAGGTACATCCATCTTCCAGT 54631 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 || || || ||| | || || ||||| || | | ||||||||||| || || || Sbjct 54630 TGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 54571 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || ||| ||| | ||| | ||||| || || |||||||| || || || || Sbjct 54570 TTGGCTTTTACATTTTCTCTTGTATCTGAGGGTTCAACCTCAAGAGTGATGGTCTTCCCG 54511 Query 152079 GTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || | || | || ||| | |||||| || Sbjct 54510 GTATGGGTTTCCATGAAAATCTGCATCTT 54482 >seq12448 Length=17785 Score = 84.2 bits (92), Expect = 5e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | ||||||||||| || ||||| | ||| ||||| || || | | ||| | Sbjct 3325 AGTCTCAACACAAGATGAAGGGTGGACTCCTGTTGAATGTTTTAGTCAGACACAGTGCAT 3384 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| || || ||||| | | | |||||||| Sbjct 3385 CCATCTTCCAGTTGCTTGCCTGCAAAGATCAGTCTTTGCTGATTAGGAGGAATTCCTTCT 3444 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || ||| ||| | |||| | || || || || || || || Sbjct 3445 TTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTG 3504 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || || || |||||||| | |||||| || Sbjct 3505 ATGGTCTTCCCAGTAAGGGTTTTCACGAAAATCTGCATCTT 3545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151448075695500