Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013-
09-15] 160,500 sequences; 1,926,439,238 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq111647 188 1e-42
seq83614 96.9 5e-15
>seq111647
Length=10039
Score = 188 bits (208), Expect = 1e-42
Identities = 179/229 (78%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||||| |||||||| |||||||||||| |||||||| || ||||| |||||
Sbjct 4572 GTCTGGAACAACCGCTCGTCATCCCATTCTGGATGCTCTTGTTTAAGCACATCACACACT 4513
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
||||| ||||| | |||||| || ||||| |||||||| || ||||| ||||| |||||
Sbjct 4512 CTGTTATGTTCTCGGAGCCAAATCGTGGCATACATCATCAGACCAGGCACCAGACCAAAC 4453
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
|||| || || ||||| | |||| || ||| || || | || ||||||||||| | |
Sbjct 4452 ACCTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGGACATGAGGGGGATAGATCATCTCC 4393
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484
||||| |||||||| | ||| ||||||| || || ||||| ||||
Sbjct 4392 ACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCATCAATTATCT 4344
Score = 125 bits (138), Expect = 1e-23
Identities = 149/202 (74%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | ||
Sbjct 3468 TCTTACCCCATGACCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTGTGATCTGTCTTGAA 3409
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
|||||| || ||||| || ||| |||| || |||||||| || || ||||||||||||||
Sbjct 3408 AAACTGATGGGTGAAGTGCTGGGCAAAGAACGCAAACATCAAATTTGTGCCCTGGGGATC 3349
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828
|| | || ||| |||||| ||||||||||| | | ||| || ||||
Sbjct 3348 AGGGATAAACTGTTTCCTTAGAAGAAATTTTTCCACAATCAATTTTGAATCAGGAAGCTC 3289
Query 9829 TGTTTTACCTGGTGAACGAGAA 9850
| | || |||| ||||||||
Sbjct 3288 TTTCTTTCCTGAAAAACGAGAA 3267
Score = 95.1 bits (104), Expect = 2e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967
|||||||| || || | ||||| || || |||| || || ||||| ||| || | |
Sbjct 2979 TCACCTTTCACGCCCATGGGAGTGGGGCAGTCGTCAGCCACAGGAGGAAGAGCTCTGGTG 2920
Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027
|||||||||| ||| || || |||||||||||| || | || | || ||||| |
Sbjct 2919 TAATAGGAGATATTAGAAAAGGCTTCCCAGCTTTTATAGCCATACTGTGCATTGTAGGTT 2860
Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059
|| |||||||||||||||| ||||| ||||
Sbjct 2859 GGCGGGCTGTCAATCAAATGTGATCTGGCTGA 2828
Score = 89.7 bits (98), Expect = 7e-13
Identities = 182/265 (69%), Gaps = 4/265 (2%)
Strand=Plus/Minus
Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003
||||| | ||| || ||||| | |||| ||||| || | |||||||| || || |
Sbjct 5191 CTTACCCTGCCAGCAATTTGCCTGCTGAATGATTCAACAAACTGGGTAAGCCCATGTTCC 5132
Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTT-TGTTTTATCAATCTC 9062
|| | ||| || |||||||||| ||| | | || |||| || | | ||||| |
Sbjct 5131 ATTAATATAGAGTTGTTGTAGAGGAACTGTCGATGGTTGTACTCCTGGTCT-TCAATTTG 5073
Query 9063 AAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9122
||| | || |||| || | ||||||||| || | | |||||||||| | | || ||
Sbjct 5072 AAAGGTGTCAGGCAGCAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCAATGCG 5013
Query 9123 ATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAAT 9181
|||||||||||||| | | ||| ||||| || || | |||| ||| | || |
Sbjct 5012 GTTTTGGTACTGGAATTGTTGGTGGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAGT 4954
Query 9182 GGTAGCCGCTGAGCTGCTGAACGTA 9206
| ||||| || | ||||| |||||
Sbjct 4953 GATAGCCACTCAAGTGCTGTACGTA 4929
>seq83614
Length=40960
Score = 96.9 bits (106), Expect = 5e-15
Identities = 119/163 (73%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| ||||||| |||||| || | ||||| || || || || |||| ||| || ||
Sbjct 17677 TCACCGATAAGGATGAGGCGGGCCGTCTGAAAGAGCTGTTCATCACCCCAGGTGGGGTGC 17618
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| ||||| | || ||||| | |||||| || | ||||||| |||||||| | |
Sbjct 17617 TCAGCCTTCAGCAGGTCACACACACGGTTGTGCTCACGCAGCCAGAGGGTGGCGTAGAGC 17558
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394
||||||||||| | ||| ||||| |||| || || |||||||
Sbjct 17557 ATGAGCCCAGGAAGCAGTCCAAACACCTCCTGGCCCACAGCCA 17515
Score = 86.0 bits (94), Expect = 9e-12
Identities = 103/138 (75%), Gaps = 4/138 (3%)
Strand=Plus/Minus
Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707
|| |||||||| |||| | || |||||| | || || || |||| | ||| | |
Sbjct 15533 CTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 15476
Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767
| |||||||| || || ||||| |||| ||||||||||| | ||||||||| || || |
Sbjct 15475 AGAACTGGTGAGTAAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGTGGGT 15416
Query 9768 CGGGAGTGAAGGTCCTCC 9785
|||| ||||| ||||||
Sbjct 15415 CGGGTGTGAACTTCCTCC 15398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 715438565920000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |