Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq111647 188 1e-42 seq83614 96.9 5e-15 >seq111647 Length=10039 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| |||||||| |||||||||||| |||||||| || ||||| ||||| Sbjct 4572 GTCTGGAACAACCGCTCGTCATCCCATTCTGGATGCTCTTGTTTAAGCACATCACACACT 4513 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| ||||| | |||||| || ||||| |||||||| || ||||| ||||| ||||| Sbjct 4512 CTGTTATGTTCTCGGAGCCAAATCGTGGCATACATCATCAGACCAGGCACCAGACCAAAC 4453 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | |||| || ||| || || | || ||||||||||| | | Sbjct 4452 ACCTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGGACATGAGGGGGATAGATCATCTCC 4393 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| ||||||| || || ||||| |||| Sbjct 4392 ACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCATCAATTATCT 4344 Score = 125 bits (138), Expect = 1e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 3468 TCTTACCCCATGACCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTGTGATCTGTCTTGAA 3409 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || |||||||| || || |||||||||||||| Sbjct 3408 AAACTGATGGGTGAAGTGCTGGGCAAAGAACGCAAACATCAAATTTGTGCCCTGGGGATC 3349 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 || | || ||| |||||| ||||||||||| | | ||| || |||| Sbjct 3348 AGGGATAAACTGTTTCCTTAGAAGAAATTTTTCCACAATCAATTTTGAATCAGGAAGCTC 3289 Query 9829 TGTTTTACCTGGTGAACGAGAA 9850 | | || |||| |||||||| Sbjct 3288 TTTCTTTCCTGAAAAACGAGAA 3267 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | ||||| || || |||| || || ||||| ||| || | | Sbjct 2979 TCACCTTTCACGCCCATGGGAGTGGGGCAGTCGTCAGCCACAGGAGGAAGAGCTCTGGTG 2920 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 |||||||||| ||| || || |||||||||||| || | || | || ||||| | Sbjct 2919 TAATAGGAGATATTAGAAAAGGCTTCCCAGCTTTTATAGCCATACTGTGCATTGTAGGTT 2860 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || |||||||||||||||| ||||| |||| Sbjct 2859 GGCGGGCTGTCAATCAAATGTGATCTGGCTGA 2828 Score = 89.7 bits (98), Expect = 7e-13 Identities = 182/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| | |||| ||||| || | |||||||| || || | Sbjct 5191 CTTACCCTGCCAGCAATTTGCCTGCTGAATGATTCAACAAACTGGGTAAGCCCATGTTCC 5132 Query 9004 ATGAGTATGGAATTGTTGTAGACGAAGTTAACGTAGTCATACTT-TGTTTTATCAATCTC 9062 || | ||| || |||||||||| ||| | | || |||| || | | ||||| | Sbjct 5131 ATTAATATAGAGTTGTTGTAGAGGAACTGTCGATGGTTGTACTCCTGGTCT-TCAATTTG 5073 Query 9063 AAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9122 ||| | || |||| || | ||||||||| || | | |||||||||| | | || || Sbjct 5072 AAAGGTGTCAGGCAGCAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCAATGCG 5013 Query 9123 ATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAAT 9181 |||||||||||||| | | ||| ||||| || || | |||| ||| | || | Sbjct 5012 GTTTTGGTACTGGAATTGTTGGTGGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAAGT 4954 Query 9182 GGTAGCCGCTGAGCTGCTGAACGTA 9206 | ||||| || | ||||| ||||| Sbjct 4953 GATAGCCACTCAAGTGCTGTACGTA 4929 >seq83614 Length=40960 Score = 96.9 bits (106), Expect = 5e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||||| |||||| || | ||||| || || || || |||| ||| || || Sbjct 17677 TCACCGATAAGGATGAGGCGGGCCGTCTGAAAGAGCTGTTCATCACCCCAGGTGGGGTGC 17618 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | || ||||| | |||||| || | ||||||| |||||||| | | Sbjct 17617 TCAGCCTTCAGCAGGTCACACACACGGTTGTGCTCACGCAGCCAGAGGGTGGCGTAGAGC 17558 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | ||| ||||| |||| || || ||||||| Sbjct 17557 ATGAGCCCAGGAAGCAGTCCAAACACCTCCTGGCCCACAGCCA 17515 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707 || |||||||| |||| | || |||||| | || || || |||| | ||| | | Sbjct 15533 CTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 15476 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 | |||||||| || || ||||| |||| ||||||||||| | ||||||||| || || | Sbjct 15475 AGAACTGGTGAGTAAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGTGGGT 15416 Query 9768 CGGGAGTGAAGGTCCTCC 9785 |||| ||||| |||||| Sbjct 15415 CGGGTGTGAACTTCCTCC 15398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715438565920000