Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq63810 159 8e-34 seq12448 158 3e-33 seq48881 150 4e-31 seq33159 145 2e-29 seq5492 140 8e-28 seq157463 129 1e-24 seq159105 118 3e-21 seq102059 100 7e-16 seq32806 98.7 2e-15 seq66463 93.3 1e-13 seq89363 86.0 2e-11 >seq63810 Length=35167 Score = 159 bits (176), Expect = 8e-34 Identities = 169/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 27910 CAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 27853 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 27852 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAGC 27793 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| ||||| |||||||| ||||||||| | ||||| |||| || ||| Sbjct 27792 AGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAACA 27733 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || | | |||||| Sbjct 27732 TCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGA 27692 Score = 154 bits (170), Expect = 4e-32 Identities = 168/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 27682 CAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 27625 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 27624 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAGC 27565 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| ||||| |||||||| ||||||||| | ||||| |||| || ||| Sbjct 27564 AGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAACA 27505 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 27504 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGA 27464 Score = 150 bits (166), Expect = 4e-31 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || |||||||| |||||||| || ||| Sbjct 28138 CAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 28081 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 28080 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAGC 28021 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | ||||| ||||| |||||||| ||||||||| | ||||| |||| || ||| Sbjct 28020 AGCGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAACA 27961 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || | | |||||| Sbjct 27960 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGTCTCAGA 27920 Score = 140 bits (154), Expect = 8e-28 Identities = 159/209 (76%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTC-ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG- 177981 || || |||||||| || ||| || || | | |||||||| |||||||| || ||| Sbjct 27454 CAGATCTTCGTGAAGAC-CTCGACCGGTCAGTCCATCACCCTGGAGGTGGA--GCCCAGT 27398 Query 177982 -ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||||| ||||| ||||| || |||||||| || | ||| || |||||| Sbjct 27397 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCAGCCCCCCTGACCAG 27338 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | | ||||| ||||| |||||||| ||||||||| | ||||| |||| || ||| Sbjct 27337 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACTCTGTCCGACTACAAC 27278 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || |||||||| || Sbjct 27277 ATCCAGAAGGAGTCCACTCTGCATCTGGT 27249 >seq12448 Length=17785 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || |||||||||||||| ||| ||| || Sbjct 3539 CAGATTTTCGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCCTCGGAT 3480 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||| ||||| ||||||||||| ||||| | |||||| Sbjct 3479 ACAATAGAAAATGTAAAAGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTAATCAGCAA 3420 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || || ||| | Sbjct 3419 AGACTGATCTTTGCAGGCAAGCAACTGGAAGATGGATGCACTGTGTCTGACTAAAACATT 3360 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||| | || || || || |||||||| |||||||| Sbjct 3359 CAACAGGAGTCCACCCTTCATCTTGTGTTGAGACT 3325 >seq48881 Length=14873 Score = 150 bits (166), Expect = 4e-31 Identities = 168/222 (76%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| ||||||||||||| || || || || || || |||||||| |||| Sbjct 7621 AGGTCAAAATGC---AAATTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGG 7565 Query 177970 TGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 ||| ||| || |||||||| ||||| || || ||||| ||||| || || || || Sbjct 7564 TGG--AGCCCAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCAT 7507 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | || ||||| || || || ||||| |||||||| | ||||| Sbjct 7506 CCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCT 7447 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | || || ||| |||| ||||| || || ||||| || || Sbjct 7446 TTCTGACTACAACATCCAGAAAGAGTCGACCCTGCACCTGGT 7405 >seq33159 Length=15523 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| |||||||| || || || || || |||||||||||||| ||| |||||| Sbjct 2315 CAGATTTTTGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCCTCAGAT 2256 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || |||| ||| ||||| || | | || Sbjct 2255 ACAATAGAAAATGTAAAGGCCAAGATACAGGATAAGGAAGAAATTCCTCCTGATCTGTAA 2196 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || || ||| | Sbjct 2195 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGCACTGTGTCTGACTACAACATT 2136 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||||| |||||||| Sbjct 2135 CAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 2101 >seq5492 Length=9153 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || |||||||||||||| ||| || || Sbjct 3605 CAGATTTTCGTGAAAACCCTTACTGGGAAGACCATCACCCTCGAGGTTGAACCCTTGGAT 3664 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || || || || ||||| ||||| || |||||||| ||||| || |||||| Sbjct 3665 ACAAAAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAA 3724 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || | |||||||| | ||| | | || || ||| | Sbjct 3725 AGACTGATCTTTGCTGGCAAGCAACGGGAAGATGGGTGCACTTTGTCTGACTACAACATT 3784 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || |||||||| |||||||| Sbjct 3785 CAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 3819 >seq157463 Length=7943 Score = 129 bits (142), Expect = 1e-24 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 177928 TTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCA 177987 |||||||||||| || || || || || ||||| || ||||| ||| ||| | || | Sbjct 553 TTTTCGTGAAAATCCTTACTGGGAAGACCATCACTCTTGAGGTTGAACCCTCGGGTACAA 494 Query 177988 TCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGAC 178047 | || || | || |||| ||||| || |||||||| ||||| | |||||| ||| Sbjct 493 TAGAAAATATAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGCTCAGCAAAGAC 434 Query 178048 TTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAA 178107 ||||| || || || ||||| ||||||||| | ||| | | || || ||| | |||| Sbjct 433 CGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCAGACTACAACATTCAAA 374 Query 178108 AAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||| || || || |||||||| |||||||| Sbjct 373 AAGAGTCCACTCTTCATCTTGTGTTGAGACT 343 >seq159105 Length=10725 Score = 118 bits (130), Expect = 3e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| |||||||| || || | ||||| |||||||||||||| ||| ||| || Sbjct 5853 CAGATTTTTGTGAAAACCCTTACTAGGAAAACAATCACCCTCGAGGTTGAACCCTCGGAT 5794 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || | || |||||| ||||| || |||||||| |||| | ||||| Sbjct 5793 ACAATAGAAAATATAAAGACAAAGATCCAGGATAAGGAAGGAATTGCTCCTGGTTAGCAA 5734 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| | ||| || || || || | |||| |||| | ||| | | || || ||| | Sbjct 5733 AGACTGAGCTTTGCTGGCAAGCAAGTGGAAGCTGGATGCACTTTGTCTGACTACAACATT 5674 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | ||| || || | || |||||||| |||||||| Sbjct 5673 CCAAAGGAGTCCGCTCTTCATCTTGTGTTGAGACT 5639 >seq102059 Length=16704 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||||||||| ||||| ||||| || |||||||| || ||||| || |||||| Sbjct 6153 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAG 6094 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | ||||| || || |||||||| ||||||||| | ||||| |||| || ||| Sbjct 6093 CAGAGGTAGATCTTTGCTGGGAAACAGCTGGAAGATGGATGCACTCTGTCCGACTACAAC 6034 Query 178101 GTCCAAAAAGAATCAACACTGCA 178123 ||| || | || || ||||| Sbjct 6033 ACCCAGAAGAAGTCCACTCTGCA 6011 >seq32806 Length=18495 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/207 (71%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || ||||| || || ||||| |||||||||| ||| || | Sbjct 13405 CACATCTTTGTGAAGACCCTGACAGGCAAGACCATCACACTCGAGGTGG--AGCCCAGTG 13462 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| |||||| || | || || || || || ||||| || ||||||| Sbjct 13463 ATACTATTGAGAATGTCAAAGCTAAAACCCAAGATAAGGAGGGCATCCCACCTGACCAGC 13522 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | | || ||| | |||||||| || ||||| | ||||| | || || || Sbjct 13523 AGCGTCGGACTTTTGCCAGCAAACAGCTGGACGATGGCCGCACTCTCTCAGACTAAAATA 13582 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| | || ||||| |||| Sbjct 13583 TCCAGAAAGAGTTCACTCTGCA-CTTG 13608 >seq66463 Length=18175 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAA-AACGATCACCCTCGAGGTGGAAAGCTCAGA 177982 || |||||||||||||| || || || || ||| ||||| || |||| ||| || || Sbjct 9630 CAGATTTTCGTGAAAACCCTTACTGGGAAGAACCATCACTCTGGAGGCTGAACCCTTGGA 9689 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || || || || || ||||| | ||| ||||||||||| ||||| | ||||| Sbjct 9690 TACAATAGAAAATGTAAAGGCCAAGATCCGGGATAAAGAAGGAATTCCTCCTGCTCAGCA 9749 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 | | || | ||| || || || || || |||| |||| | ||| | | ||| ||| | Sbjct 9750 AAGGCTGAGCTTTGCTGGCAAGCAACTGGAAGGTGGACGTACTTT----GGTTACAACAT 9805 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | ||| || || || | | |||||| ||||||| Sbjct 9806 TCCAAAGGAGTCCAC-TTTCGTCTTGTGCTGAGACT 9840 >seq89363 Length=18264 Score = 86.0 bits (94), Expect = 2e-11 Identities = 146/207 (71%), Gaps = 10/207 (5%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || | || || || || |||||||| || || ||| Sbjct 15992 CAGATCTTTGTGAAGACCCTGATGGGCAAGACCATA---CTCGAGGTCGA--GCCCAGTG 15938 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||| ||||||||||| || || || ||||| || || ||||| | ||||||| Sbjct 15937 ACACCACTGAGAACGTCAACGCTAAAATCCAAGACAAGGAGGGCATCCCATCTGACCAGC 15878 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | ||||| | || | || |||||||| || ||||| ||||| |||||||| Sbjct 15877 AGCGACTGCTTTTTGAGGGCAAACAGCTGGAGGATGG--CCACTCTCTTAGATTATAATA 15820 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || ||||| |||| Sbjct 15819 TCCAGAAAGAGTCCACTCTGCA-CTTG 15794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201255839637000