Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20ferrumequinum_20[genbank_20GCA_5F000465495.1_202013- 09-15] 160,500 sequences; 1,926,439,238 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq63810 134 1e-26 seq48881 134 1e-26 seq104951 102 8e-17 >seq63810 Length=35167 Score = 134 bits (148), Expect = 1e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| ||||||||| ||||| |||||||| || ||||| Sbjct 27468 AGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 27527 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| |||||||| || |||| ||||| ||||| | ||| | || ||| Sbjct 27528 CCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCT 27587 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| || ||| | | | ||||| || | ||||||||||| || Sbjct 27588 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 27647 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || ||||| |||| ||||| ||||| ||||||||| Sbjct 27648 ATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATG 27686 Score = 129 bits (142), Expect = 5e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| ||| ||||| ||||| |||||||| || ||||| Sbjct 27696 AGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGT 27755 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| |||||||| || |||| ||||| ||||| | ||| | || ||| Sbjct 27756 CCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCT 27815 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| || ||| | | | ||||| || | ||||||||||| || Sbjct 27816 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 27875 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || ||||| |||| ||||| ||||| ||||||||| Sbjct 27876 ATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATG 27914 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| ||||||||| ||||| |||||||| || ||||| Sbjct 27924 AGACGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGT 27983 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| |||||||| || |||| ||||| ||||| | ||| | || ||| Sbjct 27984 CCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCGCTGCTGGTCAGGGGGGATGCCCTCT 28043 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| || ||| | | | ||||| || | ||||||||||| || Sbjct 28044 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 28103 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||| |||| ||||| || || |||||||| Sbjct 28104 ATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 28141 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||||||||| ||| ||||||||| ||||| |||||||| || ||||| | || || Sbjct 27249 ACCAGATGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCC 27308 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| |||||||| || |||| | ||| ||||| | ||| || ||| ||||| | Sbjct 27309 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGCTGCCCTCTTTGTCTTGG 27368 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||||| || || | | | Sbjct 27369 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGACTGA 27428 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||| ||||| ||||| ||||||||| Sbjct 27429 CCGGTCGAGGTCTTCACGAAGATCTGCATG 27458 >seq48881 Length=14873 Score = 134 bits (148), Expect = 1e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| ||||| || ||| ||||| ||||| ||||| Sbjct 7383 ACAGCCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTC 7442 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| | || || ||||||||||| || || || || | ||| ||||| | Sbjct 7443 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGG 7502 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||| | || |||||| ||| ||| || ||||| | | |||||||| | ||| Sbjct 7503 GGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTC 7562 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||| || || || || |||||||| ||||| |||||||| ||||| || Sbjct 7563 CACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAAATTTGCATTTT 7616 >seq104951 Length=12537 Score = 102 bits (112), Expect = 8e-17 Identities = 157/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| ||| |||| ||||||||||| ||||| ||||| Sbjct 11025 AGACGAAGCACCAAGTGCAGAGTGGACTCTTTCTCGATGTTATAGTCTGAGAGAGTGCGG 11084 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| | || ||||| ||||| ||||| | || | || |||| Sbjct 11085 CCATCCTCCAGCTGTTTGCCCACAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCC 11144 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACC-TCCACCG 41822 |||| | || |||| |||| ||| | | |||||| || | ||| ||| | | | Sbjct 11145 TTGT-CTTGGATTTTGGCTTTGACGTTTTCAATAGTGTCACTGGGCTCGACCTTTGAGTG 11203 Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || || ||||| || || | || |||||||| Sbjct 11204 TGATGGTCTTGCCTGTCAGGGTTTTCCCAAAGATCTGCAT 11243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461376502600000