Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq998 93.3 9e-14
seq604 91.5 3e-13
seq156 89.7 1e-12
seq9721 86.0 1e-11
>seq998
Length=104978
Score = 93.3 bits (102), Expect = 9e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767
||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct 62446 TTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 62505
Query 165768 GCCCCACGATGGGC 165781
|||||||| |||||
Sbjct 62506 GCCCCACGTTGGGC 62519
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 77366 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 77307
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 77306 CCCACGTTGGGC 77295
>seq604
Length=510426
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 226197 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 226256
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 226257 CCCCACGTTGGGC 226269
>seq156
Length=2569055
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 1873026 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1872967
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 1872966 CCCACGTTGGGC 1872955
>seq9721
Length=1014
Score = 86.0 bits (94), Expect = 1e-11
Identities = 220/329 (67%), Gaps = 12/329 (4%)
Strand=Plus/Minus
Query 41091 AAACTCGCCAAAGAACTGGGAGTTGTGATTCCGATTCCtttttttGAAAAAGATGGGAAC 41150
|| || || || || ||||| || ||||| ||| || || ||||| ||| ||
Sbjct 746 AAGCTGGCAAAGGAGCTGGGTGTAGTGATACCGGTTAGCTTCTTTGAGGAAGCA---AAT 690
Query 41151 AATT---ATTACAATTCCGTCGCTGTCGCGGATGCCGATGGTTCTATCGTAGGTGTTTAC 41207
||| ||||||| || | || | ||||| ||||| || | | || |||||
Sbjct 689 AATGCACATTACAACTCAATAGCCATTATCGATGCTGATGGAACTGACCTTGGGGTTTAT 630
Query 41208 AGAAAAACTCATATCCCTCAGAGCAAGTGTTACGAAGAGAAATTTTACTTTACACCAAGT 41267
|| || | ||||| ||| | | ||||| ||||||| ||||| || | || |
Sbjct 629 AGGAAGTCGCATATTCCTGATGGACCTGGTTACCAAGAGAAGTTTTATTTCAATCCTGGA 570
Query 41268 AGCAATCCGTATGAAGTTTTTGAAACAAAATTCGGGAAAATGGGTGT-GCTGATTTGCTG 41326
|| | | | | |||||| | ||||| || | ||||| || || ||| || || ||
Sbjct 569 GACACTGGCTTTAAGGTTTTTCAGACAAAGTTTGCAAAAATTGGCGTAGCT-ATATGTTG 511
Query 41327 GGATCAGTGGTTCTCTGAAGCAGCGAAATGTCTGGCTCTAGAAGGCGCTGA--TTTTATT 41384
|||||||||||| |||| ||||| | | |||||||| | || ||||| |||| ||
Sbjct 510 GGATCAGTGGTTTCCTGAGGCAGCTCGAGCTATGGCTCTACAGGGTGCTGAAGTTTTGTT 451
Query 41385 GTATACCCCACCGCCATCGGCTCGGAGCC 41413
||| ||||||||||| || || || ||
Sbjct 450 TTAT--CCCACCGCCATTGGTTCTGAACC 424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1056964187760570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |