Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq998 93.3 9e-14 seq604 91.5 3e-13 seq156 89.7 1e-12 seq9721 86.0 1e-11 >seq998 Length=104978 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct 62446 TTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 62505 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 62506 GCCCCACGTTGGGC 62519 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 77366 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 77307 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 77306 CCCACGTTGGGC 77295 >seq604 Length=510426 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 226197 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 226256 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 226257 CCCCACGTTGGGC 226269 >seq156 Length=2569055 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 1873026 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1872967 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1872966 CCCACGTTGGGC 1872955 >seq9721 Length=1014 Score = 86.0 bits (94), Expect = 1e-11 Identities = 220/329 (67%), Gaps = 12/329 (4%) Strand=Plus/Minus Query 41091 AAACTCGCCAAAGAACTGGGAGTTGTGATTCCGATTCCtttttttGAAAAAGATGGGAAC 41150 || || || || || ||||| || ||||| ||| || || ||||| ||| || Sbjct 746 AAGCTGGCAAAGGAGCTGGGTGTAGTGATACCGGTTAGCTTCTTTGAGGAAGCA---AAT 690 Query 41151 AATT---ATTACAATTCCGTCGCTGTCGCGGATGCCGATGGTTCTATCGTAGGTGTTTAC 41207 ||| ||||||| || | || | ||||| ||||| || | | || ||||| Sbjct 689 AATGCACATTACAACTCAATAGCCATTATCGATGCTGATGGAACTGACCTTGGGGTTTAT 630 Query 41208 AGAAAAACTCATATCCCTCAGAGCAAGTGTTACGAAGAGAAATTTTACTTTACACCAAGT 41267 || || | ||||| ||| | | ||||| ||||||| ||||| || | || | Sbjct 629 AGGAAGTCGCATATTCCTGATGGACCTGGTTACCAAGAGAAGTTTTATTTCAATCCTGGA 570 Query 41268 AGCAATCCGTATGAAGTTTTTGAAACAAAATTCGGGAAAATGGGTGT-GCTGATTTGCTG 41326 || | | | | |||||| | ||||| || | ||||| || || ||| || || || Sbjct 569 GACACTGGCTTTAAGGTTTTTCAGACAAAGTTTGCAAAAATTGGCGTAGCT-ATATGTTG 511 Query 41327 GGATCAGTGGTTCTCTGAAGCAGCGAAATGTCTGGCTCTAGAAGGCGCTGA--TTTTATT 41384 |||||||||||| |||| ||||| | | |||||||| | || ||||| |||| || Sbjct 510 GGATCAGTGGTTTCCTGAGGCAGCTCGAGCTATGGCTCTACAGGGTGCTGAAGTTTTGTT 451 Query 41385 GTATACCCCACCGCCATCGGCTCGGAGCC 41413 ||| ||||||||||| || || || || Sbjct 450 TTAT--CCCACCGCCATTGGTTCTGAACC 424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1056964187760570