Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq41 340 1e-88 seq7730 174 1e-38 seq106 132 3e-26 seq56 120 2e-22 seq598 109 4e-19 >seq41 Length=9019916 Score = 340 bits (376), Expect = 1e-88 Identities = 409/554 (74%), Gaps = 14/554 (3%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||| || |||||||||||||||||| ||||| | |||||| || || |||| Sbjct 2255508 ATTAATCATTGTTTGTATATACTTCAAATTTGTATTTAATGCCTTTCTCCTCCTGGACAT 2255567 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||||||| || ||| |||||| | |||||| |||||||| | | || | |||||| Sbjct 2255568 CAGAAAGAATACCTGGGTATTCTGGGAGAAGTTTATATTTCTCCAAAGCAGTTCCTGGAA 2255627 Query 4088 AAAAG--GTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCA 4145 |||| ||||||| | ||| || || ||||| || ||| |||||| || Sbjct 2255628 AAAAAATGTGTCACTGTTAAATTC----------CTTGTCACGAATAGTCTAAGATGGCC 2255677 Query 4146 TGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTAC 4205 ||| | |||| ||||| |||| ||||||| ||| | | |||||| |||||||| || Sbjct 2255678 TGGCTTGTTCATGGCTTCCTTATCATCAGAACTGCCTTCCACTATCCAAACCATGTCCAC 2255737 Query 4206 TTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAA 4265 || |||| ||||||||| || || |||||||| || |||||||| | ||| | || | Sbjct 2255738 TTGGTTTGTTAATTCTGGTTGCTCAGTAAGTTTCAAGGCATCATCCAGACTTTGGGCAAG 2255797 Query 4266 AAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCC 4325 ||||||| || | || ||| | ||||| ||||| | ||||||| | |||||| ||| | Sbjct 2255798 AAAATGAACTGTTTGCGGAGGTTCCTTGAGTTCTCTATTGAGAACTAAATTAATCCTGTC 2255857 Query 4326 TTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAA 4385 |||||||| | |||||||||||||| |||||||| |||||| || || ||||||| || Sbjct 2255858 CTTTAAAGGTTGATTCTTCTCAGGAATGGAGAACCAGGTCTTTCTAGCCGTAATCAC-AA 2255916 Query 4386 ATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATT 4445 ||||||| | ||| | | ||| || |||||||||||||||| ||| || || || Sbjct 2255917 ATTCTGTGTTTCTTCTGCTCAAGGGGTTAAGGTCATTCTTTGGAAATATTTGAATTCGTT 2255976 Query 4446 CATAAGTCTTGGCCAAGGCAAGTTACCT-TGTTTGCCAATGCCCATGTTTTGAGCTACAG 4504 | || ||||| |||| || ||| | ||| |||||||||| || | ||||| Sbjct 2255977 CCCGAGAGGGGGCCAGGGCAGGTCTCCTATTCCTGCTGATGCCCATGTCCTGGGATACAG 2256036 Query 4505 CAACAATGCAGTTT 4518 | | ||||||||| Sbjct 2256037 CGATGATGCAGTTT 2256050 >seq7730 Length=1237 Score = 174 bits (192), Expect = 1e-38 Identities = 349/512 (68%), Gaps = 4/512 (1%) Strand=Plus/Minus Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 ||||||||| | ||||| || | ||| || || ||||||||||| || || || | Sbjct 831 GACATGAGCGAGGATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAG 772 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874 |||||||| ||||| | ||||||| |||||| ||||||| ||||| |||||||| Sbjct 771 ACCCATATCGGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTTGTAACATAAAA 712 Query 101875 TTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGC 101934 || || | || || || || | |||| || ||| ||| ||||||||| Sbjct 711 CTGCGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTAAGGTCAGAAGGATTCCAAGC 652 Query 101935 ACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAA 101994 |||||| |||| || ||| ||| || | || || | | ||| | | | Sbjct 651 CGACATTATTATCCGTCGATCATCAGGATTGTTCTTGATCTTGTTAATTACATCCGAGAG 592 Query 101995 TTGGTCAACTCCTTCTCCTTTATAATC-GCGCCCAACACCTTTATATTCTGCTCCGAAAT 102053 || |||| ||||| || ||||||| || | | | || | || | || || || | Sbjct 591 CTGATCAAATCCTTGGCCAGTATAATCAGCATGC-ATATCTGTGTACTTAGCACCAAAGT 533 Query 102054 GCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAA 102113 | ||||| ||||||||||| || |||||||| || ||||| ||||| ||| | |||| Sbjct 532 GTCTCCATTGAAATCCATAAACGGGTCCAAGGTCACCTTCTTCTCTCTCAGTCAGTCCAA 473 Query 102114 GTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGC-TGAT 102172 ||| | | | | ||| || ||||| ||||||| || || | || | | ||| Sbjct 472 TACCATCAAGATAAGTTCTTGACGCATTCCCATCCCATATATGGATACCCTTTTCTTGAA 413 Query 102173 AGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTC 102232 |||||| | || || || || || ||||| | ||||| ||||||||||||||| Sbjct 412 GTAACTTTGC-ATTGGTTGAACCGCTTATGAACCAAAGAAGTTCCTCAACAACACCTCTC 354 Query 102233 CAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 || ||||||||||| || || | ||||||||| Sbjct 353 CAGAATACTCTCTTTGTCGTCAGAAGTGGAAA 322 >seq106 Length=10866489 Score = 132 bits (146), Expect = 3e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 26952 ACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAA 27011 || ||||| | || || || ||||| ||| || ||||||||||| |||| || ||| Sbjct 6670098 ACCATGGGTTTGACACAGGTACAGCCCACATCTACCAGCATCTTCTCCAGCCGGAAGGAA 6670039 Query 27012 TTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAG 27071 | |||||| | || || | | |||| || || |||||||| ||||| | || ||| Sbjct 6670038 TGGGGGCAGTGCCGAGGCTCCCTTCGCAGGACCAGGATCTCTTGCTGGATGGCAACGGAG 6669979 Query 27072 TTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCT 27131 |||| ||||| |||| ||||| |||||||| | ||| |||| ||| ||||| || Sbjct 6669978 TTCAGGTGGTGGTCTTGCTTCCCTTCAGCATTGAGACAGAACAAGTGGCGGCACTTCGCC 6669919 Query 27132 TCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 ||||| ||||||| ||||||||| || || |||||||| Sbjct 6669918 TCCCAGATCACAGGGGGATATCTCTCGGAGTCCTCATTGCG 6669878 >seq56 Length=7808877 Score = 120 bits (132), Expect = 2e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||| ||| ||||| | |||||| |||||||| |||||||||| ||||||||| Sbjct 7416729 TTATAAACAGCACTGCCTCCCACTATCCAAACCATGTCCACTTTATTTGTTAATTCTGGT 7416788 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || |||||| ||| |||||||| | ||| || || | ||||||||||| |||||| Sbjct 7416789 TGCTCAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGGA 7416848 Query 4285 AGCTCC 4290 | ||| Sbjct 7416849 GGTTCC 7416854 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| |||||||||| | |||||| ||| | |||||||| || || |||||||| Sbjct 7423793 CTTGAGTTCTCTGCTGAGAACTAAATTAATCCTGTCCTTTAAAGGTCGATTTTTCTCAGG 7423852 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| |||||||| ||| || Sbjct 7423853 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGCTTACCT 7423901 Score = 114 bits (126), Expect = 9e-21 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 ||||||||||||||| | ||||| |||||||||||| ||||| |||||| |||||||| Sbjct 7414393 AAGTTTGTATTTCTCCAAATCAATTTCTGGAAAAAATACGTCACTTTCAAATTCTTGCAT 7414452 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||||| |||||||| ||| |||||| || ||| | || || ||||| || Sbjct 7414453 GATCCTTGTCACAAATAGTCTAAGATGGCCTGGCTTGCTGATGGCTTCCTT 7414503 >seq598 Length=623912 Score = 109 bits (120), Expect = 4e-19 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 3976 TTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGA 4035 || || |||||||||| ||||||||||||||| | ||| || || | |||| |||||| Sbjct 54520 TTTTTTTCATATACTTAAAATTTGTACTTAATGCCTTTTTCCTCCTAGACATCTGAAAGA 54579 Query 4036 ACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCT--GGAAAAAAGG 4093 |||| ||| |||||| | ||||||||||||||| | ||||| |||| |||||||| | Sbjct 54580 ACACCTGGGTATTCTGGGAGAAGTTTGTATTTCTCCAAATCAATTTCTGGGGAAAAAATG 54639 Query 4094 TGTCACATTCAA 4105 ||| ||||| Sbjct 54640 CACCACTTTCAA 54651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360971894006189