Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq782 230 3e-55
seq93 134 2e-26
seq3 123 3e-23
seq514 102 1e-16
>seq782
Length=486663
Score = 230 bits (254), Expect = 3e-55
Identities = 316/440 (72%), Gaps = 9/440 (2%)
Strand=Plus/Minus
Query 52847 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTG 52906
|| ||||| || || |||| ||| | |||| ||||| || |||||||| || ||||||
Sbjct 446721 TAATACATACCAGTCTTTAAACCCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTG 446662
Query 52907 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 52966
||| | | | || ||||| |||| ||| || |||||||| ||||| || ||
Sbjct 446661 CCATAGTTAGCA------ATGTGGATGTTCAGAGACTGGCTTTGATCAATGAAAGCACCT 446608
Query 52967 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT 53026
|| || || ||||| || | || || || || | |||||||| | ||| ||||||| |
Sbjct 446607 CTCTCAGCTGCCATCTTGAGAATGGTTTTCTGAGAGATTTCCCATACAGTCTTATAAAGT 446548
Query 53027 CGCTTAATATCTTCTGGAAGGTTTG-TAT--TCTGAATAGATCCACCATCTACCATAATC 53083
|||| | || || |||| | || ||| |||| ||||| ||| | | ||||||
Sbjct 446547 TGCTTCAAGTCATCAGGAATTTCTGATATGCTCTGGATAGAGCCATTGCATGCAATAATC 446488
Query 53084 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 53143
||| || ||||| |||||||| || ||| | | | || | || | || |||
Sbjct 446487 TGATTTTTCATCTCTTCATTCCACAAGCCCTGCTCAATCAGATCTTTCAGTAAGTGAGGA 446428
Query 53144 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 53203
|| || | ||||||||||| ||||| ||||| |||||||| || || |||||| | |||
Sbjct 446427 TTTACAATCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTACATGGT 446368
Query 53204 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 53263
|| | |||||||||||||||| || ||||||||||| ||||| ||||| || || |
Sbjct 446367 TCAATGGACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATA 446308
Query 53264 AATAAACTATTTCTAAGACC 53283
| |||||||||||| | |||
Sbjct 446307 AGTAAACTATTTCTTATACC 446288
>seq93
Length=2374459
Score = 134 bits (148), Expect = 2e-26
Identities = 112/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209
|| ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| |
Sbjct 38940 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 38999
Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269
|||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 39000 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 39059
Query 53270 CTATTTCTAAGACCGTA 53286
|||||||| | ||| ||
Sbjct 39060 CTATTTCTTATACCATA 39076
Score = 95.1 bits (104), Expect = 1e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084
|| |||||||||||| |||||||| ||||||||||| || | || || || |||| |
Sbjct 52511 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 52570
Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144
|| || || |||||||| ||||| || | ||| || ||| | | || || |||||||
Sbjct 52571 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 52630
Query 54145 CGGTTCCAAGTATAT 54159
|| |||||||| ||
Sbjct 52631 AGGCTCCAAGTAAAT 52645
Score = 93.3 bits (102), Expect = 5e-14
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
|||| || | ||| |||||||||||||| | || || || || ||||| || || | ||
Sbjct 63821 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATTCTTGCTGCCAAAA 63880
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
|||| || || || || | ||||| || |||||| |||| || | || ||| || |
Sbjct 63881 TGGCGTAGTCAGGGTGCTTAGTAGTCAGGGTTGCTGCTGTTTCAGCAGCCAAAGTATCTA 63940
Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933
||| || || || || ||| | |||| |||||||| || |||||
Sbjct 63941 GTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 63986
Score = 91.5 bits (100), Expect = 2e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449
|| || || ||||| || | || || || || ||||| || || || || || || |||
Sbjct 47799 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 47858
Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509
||||||||||| ||||| | |||||| | || || || | || ||||| |||||
Sbjct 47859 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 47918
Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569
| | |||||||| || ||||| | ||||| || ||||| || || || | ||| |
Sbjct 47919 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACTCCAATTCCAATGGGGCGATGGCGT 47978
Query 53570 TTATTAGA 53577
||||| ||
Sbjct 47979 TTATTTGA 47986
>seq3
Length=9954913
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || |
Sbjct 27230 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 27171
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||| ||||| || ||||| || ||||||||||| |||||||||||||| ||||| |
Sbjct 27170 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAG 27111
Query 24277 CAATAAGTCTTTCTCC 24292
| | || | ||||||
Sbjct 27110 CTACAACACGTTCTCC 27095
Score = 102 bits (112), Expect = 1e-16
Identities = 86/106 (81%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
|||||||| || |||||||| | ||||||||||| || ||||| |||||||| |||||
Sbjct 25329 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATGGC 25270
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500
||||| || || |||||||| | || || |||||||| ||||||
Sbjct 25269 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCT 25224
>seq514
Length=1022489
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218
|| ||||| || || | ||| |||||||| |||||||| ||||| || || | || ||
Sbjct 284463 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 284522
Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277
| ||| ||||| | ||||| ||||| || ||||||||||||||||| || ||||||||
Sbjct 284523 AACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 284581
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593250786192720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |