Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq35 266 4e-66
seq170 178 2e-39
seq356 156 5e-33
>seq35
Length=5694442
Score = 266 bits (294), Expect = 4e-66
Identities = 548/802 (68%), Gaps = 25/802 (3%)
Strand=Plus/Minus
Query 176451 ACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCA 176510
|| ||||| | ||| | |||||||| || ||||||||||| ||||| || || ||||
Sbjct 3839934 ACCAACATCTACCTGCTCAACTTGGCCATTTCTGACTTGCTGTTTCTATTCACCCTGCCC 3839875
Query 176511 TTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAA 176570
|| ||||| |||||| | | || | |||| ||| |||||| | | |||||||
Sbjct 3839874 TTCTGGATTCACTATGTCA-AGTGGA--ATGAGTGGGTTTTTGGCCATCGCATGTGTAAG 3839818
Query 176571 CTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTA 176630
||||| || ||| ||||||| ||||| | || |||||| ||||||||||||
Sbjct 3839817 TTGCTCTCCGGGTTGTATTACATGGGCTTGTACGGGGAGATCTTTTTCATCATCCTGCTG 3839758
Query 176631 ACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTA 176690
|| ||||| | ||||| || | ||| | ||||| ||| || || | || ||
Sbjct 3839757 ACGATAGACCGATATCTGGCCATCGTCCACGCTGTGTTTGCCCTGCGGGCCCGGACCGTC 3839698
Query 176691 ACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCT 176750
|| | ||| || | | | |||| |||||| ||||||||| || ||||||||
Sbjct 3839697 ACTTTTGGTATCATAAGCAGTGTTCTCACCTGGGCCCTGGCAGGGCTGGCAGCCCTCCCT 3839638
Query 176751 GAATTTTTCTTTCATGGACACCAAGATGACAATGGT-AGGGTT----CAGTGTGATCCTT 176805
|||||| |||| |||| |||| | || ||| || ||| |||| | | |||
Sbjct 3839637 GAATTTATCTTCCATGAGTTCCAACAGGAGTCTGGACAGAGTTTCTGCAGT-TCA--CTT 3839581
Query 176806 ACTACCCAGAGATGTCTACAA--ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTAT 176863
||||| ||| | | | | | |||| ||| |||| || | | ||| | |
Sbjct 3839580 --TACCCGGAG--GACGAAGAGGACACCTGGAAGCGTTTTCACGCTGTGAGGATGAATGT 3839525
Query 176864 GTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAG 176923
|| |||||| | |||||||||||||||||||||||||||| | ||| || | ||
Sbjct 3839524 CTTGGGTCTCACTCTGCCTCTGCTCATTATGGCTGTCTGCTATGCCGGAATCATTAAAAC 3839465
Query 176924 ACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCAT 176983
|| | || ||||||| | ||| ||||| ||||||||| ||||||| ||| |||||||
Sbjct 3839464 CCTCATCAGATGCCCCAGTAGGAAAAAGTATAAGGCCATCCGGCTCATTTTTATCATCAT 3839405
Query 176984 GGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCA 177043
||||| || ||| |||| ||| ||| |||||| | | |||||| || || | | |||
Sbjct 3839404 GGTGGTCTTTTTCATTTTCTGGGGACCTTACAACCTGGCTCTCCTTCTCTCCGCTTATCA 3839345
Query 177044 CGCAAC--CCTTCTT--AACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGC 177099
||| |||||| | | | | |||| | ||||| | |||| |||| |||
Sbjct 3839344 ---AACGGTCTTCTTTGAGACCG-ACTGTGAACGGAGCAAACAGCTGGATGTGGCCATGC 3839289
Query 177100 TGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCG 177159
|| | ||| | | |||||||| ||||| ||| ||||||| ||||||||||| || |
Sbjct 3839288 TGGTGACAGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCTGTGATCTACGCCTTTG 3839229
Query 177160 TGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACC 177219
| || |||| ||| | ||||| ||||||| ||||||| || || | | ||
Sbjct 3839228 TCGGAGAGAGGTTCCGGGAGCACCTCCACCACTTTTTCCACAGGCACATGCTCCTGCCCC 3839169
Query 177220 TCTGCAAGTACATCCCCTTCCT 177241
| |||| ||||| || |||||
Sbjct 3839168 TGGGCAAATACATTCCATTCCT 3839147
Score = 266 bits (294), Expect = 4e-66
Identities = 548/802 (68%), Gaps = 25/802 (3%)
Strand=Plus/Minus
Query 9565 ACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCA 9624
|| ||||| | ||| | |||||||| || ||||||||||| ||||| || || ||||
Sbjct 3839934 ACCAACATCTACCTGCTCAACTTGGCCATTTCTGACTTGCTGTTTCTATTCACCCTGCCC 3839875
Query 9625 TTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAA 9684
|| ||||| |||||| | | || | |||| ||| |||||| | | |||||||
Sbjct 3839874 TTCTGGATTCACTATGTCA-AGTGGA--ATGAGTGGGTTTTTGGCCATCGCATGTGTAAG 3839818
Query 9685 CTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTA 9744
||||| || ||| ||||||| ||||| | || |||||| ||||||||||||
Sbjct 3839817 TTGCTCTCCGGGTTGTATTACATGGGCTTGTACGGGGAGATCTTTTTCATCATCCTGCTG 3839758
Query 9745 ACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTA 9804
|| ||||| | ||||| || | ||| | ||||| ||| || || | || ||
Sbjct 3839757 ACGATAGACCGATATCTGGCCATCGTCCACGCTGTGTTTGCCCTGCGGGCCCGGACCGTC 3839698
Query 9805 ACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCT 9864
|| | ||| || | | | |||| |||||| ||||||||| || ||||||||
Sbjct 3839697 ACTTTTGGTATCATAAGCAGTGTTCTCACCTGGGCCCTGGCAGGGCTGGCAGCCCTCCCT 3839638
Query 9865 GAATTTTTCTTTCATGGACACCAAGATGACAATGGT-AGGGTT----CAGTGTGATCCTT 9919
|||||| |||| |||| |||| | || ||| || ||| |||| | | |||
Sbjct 3839637 GAATTTATCTTCCATGAGTTCCAACAGGAGTCTGGACAGAGTTTCTGCAGT-TCA--CTT 3839581
Query 9920 ACTACCCAGAGATGTCTACAA--ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTAT 9977
||||| ||| | | | | | |||| ||| |||| || | | ||| | |
Sbjct 3839580 --TACCCGGAG--GACGAAGAGGACACCTGGAAGCGTTTTCACGCTGTGAGGATGAATGT 3839525
Query 9978 GTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAG 10037
|| |||||| | |||||||||||||||||||||||||||| | ||| || | ||
Sbjct 3839524 CTTGGGTCTCACTCTGCCTCTGCTCATTATGGCTGTCTGCTATGCCGGAATCATTAAAAC 3839465
Query 10038 ACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCAT 10097
|| | || ||||||| | ||| ||||| ||||||||| ||||||| ||| |||||||
Sbjct 3839464 CCTCATCAGATGCCCCAGTAGGAAAAAGTATAAGGCCATCCGGCTCATTTTTATCATCAT 3839405
Query 10098 GGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCA 10157
||||| || ||| |||| ||| ||| |||||| | | |||||| || || | | |||
Sbjct 3839404 GGTGGTCTTTTTCATTTTCTGGGGACCTTACAACCTGGCTCTCCTTCTCTCCGCTTATCA 3839345
Query 10158 CGCAAC--CCTTCTT--AACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGC 10213
||| |||||| | | | | |||| | ||||| | |||| |||| |||
Sbjct 3839344 ---AACGGTCTTCTTTGAGACCG-ACTGTGAACGGAGCAAACAGCTGGATGTGGCCATGC 3839289
Query 10214 TGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCG 10273
|| | ||| | | |||||||| ||||| ||| ||||||| ||||||||||| || |
Sbjct 3839288 TGGTGACAGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCTGTGATCTACGCCTTTG 3839229
Query 10274 TGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACC 10333
| || |||| ||| | ||||| ||||||| ||||||| || || | | ||
Sbjct 3839228 TCGGAGAGAGGTTCCGGGAGCACCTCCACCACTTTTTCCACAGGCACATGCTCCTGCCCC 3839169
Query 10334 TCTGCAAGTACATCCCCTTCCT 10355
| |||| ||||| || |||||
Sbjct 3839168 TGGGCAAATACATTCCATTCCT 3839147
>seq170
Length=9568404
Score = 178 bits (196), Expect = 2e-39
Identities = 143/173 (83%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809
||||| |||| ||| |||| ||||||||| ||||||||||||||||| ||||||||||||
Sbjct 9399134 AGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 9399075
Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869
|||||||| |||||||| | || | ||| |||||||||||||| ||||| ||| | ||
Sbjct 9399074 ACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACC 9399015
Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922
|||||||||||||| ||| ||||| || || || |||||| ||||| ||
Sbjct 9399014 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGTAGAGCCATGAGAGGCAGATC 9398962
>seq356
Length=1899616
Score = 156 bits (172), Expect = 5e-33
Identities = 130/157 (83%), Gaps = 3/157 (2%)
Strand=Plus/Minus
Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141
|||||||| ||||||| |||||| || || || |||||||| ||||||||||| | | |
Sbjct 754574 CAGCGCCTGAGCCTCAGCCTGAGCGTCTTCAGGTTTTCCCCGAGGGAGTTCACGTGCTTC 754515
Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201
|| || | ||| ||| | |||| |||||||||||||||||||||| ||||||||||
Sbjct 754514 TTGATCTC-TGGGTCCTG--GCTCTCAGCCTGGGGCATCACCTCCTCCAAGTAAAACTGG 754458
Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238
|||||||| |||| ||| ||||| |||||||||||||
Sbjct 754457 ATCATCTCCGACAAGGCTTGGCAACCCAGGTAACCCT 754421
Score = 105 bits (116), Expect = 8e-18
Identities = 78/91 (86%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 137926 TTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGCTC 137985
||||||||| | ||||||||||| ||||||||||| |||||||| || ||||| |||
Sbjct 756764 TTTTTCATCCTCAGTGTCATGTAGGCTTCTATGTAGTTGATGAAGATATCGAACTCACTC 756705
Query 137986 ATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016
||||| |||||||||||||| || |||||||
Sbjct 756704 ATGGCTTTGTAGACCCCTTTCTCTTGGAGCT 756674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589608876473560
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