Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq35 266 4e-66 seq170 178 2e-39 seq356 156 5e-33 >seq35 Length=5694442 Score = 266 bits (294), Expect = 4e-66 Identities = 548/802 (68%), Gaps = 25/802 (3%) Strand=Plus/Minus Query 176451 ACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCA 176510 || ||||| | ||| | |||||||| || ||||||||||| ||||| || || |||| Sbjct 3839934 ACCAACATCTACCTGCTCAACTTGGCCATTTCTGACTTGCTGTTTCTATTCACCCTGCCC 3839875 Query 176511 TTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAA 176570 || ||||| |||||| | | || | |||| ||| |||||| | | ||||||| Sbjct 3839874 TTCTGGATTCACTATGTCA-AGTGGA--ATGAGTGGGTTTTTGGCCATCGCATGTGTAAG 3839818 Query 176571 CTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTA 176630 ||||| || ||| ||||||| ||||| | || |||||| |||||||||||| Sbjct 3839817 TTGCTCTCCGGGTTGTATTACATGGGCTTGTACGGGGAGATCTTTTTCATCATCCTGCTG 3839758 Query 176631 ACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTA 176690 || ||||| | ||||| || | ||| | ||||| ||| || || | || || Sbjct 3839757 ACGATAGACCGATATCTGGCCATCGTCCACGCTGTGTTTGCCCTGCGGGCCCGGACCGTC 3839698 Query 176691 ACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCT 176750 || | ||| || | | | |||| |||||| ||||||||| || |||||||| Sbjct 3839697 ACTTTTGGTATCATAAGCAGTGTTCTCACCTGGGCCCTGGCAGGGCTGGCAGCCCTCCCT 3839638 Query 176751 GAATTTTTCTTTCATGGACACCAAGATGACAATGGT-AGGGTT----CAGTGTGATCCTT 176805 |||||| |||| |||| |||| | || ||| || ||| |||| | | ||| Sbjct 3839637 GAATTTATCTTCCATGAGTTCCAACAGGAGTCTGGACAGAGTTTCTGCAGT-TCA--CTT 3839581 Query 176806 ACTACCCAGAGATGTCTACAA--ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTAT 176863 ||||| ||| | | | | | |||| ||| |||| || | | ||| | | Sbjct 3839580 --TACCCGGAG--GACGAAGAGGACACCTGGAAGCGTTTTCACGCTGTGAGGATGAATGT 3839525 Query 176864 GTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAG 176923 || |||||| | |||||||||||||||||||||||||||| | ||| || | || Sbjct 3839524 CTTGGGTCTCACTCTGCCTCTGCTCATTATGGCTGTCTGCTATGCCGGAATCATTAAAAC 3839465 Query 176924 ACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCAT 176983 || | || ||||||| | ||| ||||| ||||||||| ||||||| ||| ||||||| Sbjct 3839464 CCTCATCAGATGCCCCAGTAGGAAAAAGTATAAGGCCATCCGGCTCATTTTTATCATCAT 3839405 Query 176984 GGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCA 177043 ||||| || ||| |||| ||| ||| |||||| | | |||||| || || | | ||| Sbjct 3839404 GGTGGTCTTTTTCATTTTCTGGGGACCTTACAACCTGGCTCTCCTTCTCTCCGCTTATCA 3839345 Query 177044 CGCAAC--CCTTCTT--AACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGC 177099 ||| |||||| | | | | |||| | ||||| | |||| |||| ||| Sbjct 3839344 ---AACGGTCTTCTTTGAGACCG-ACTGTGAACGGAGCAAACAGCTGGATGTGGCCATGC 3839289 Query 177100 TGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCG 177159 || | ||| | | |||||||| ||||| ||| ||||||| ||||||||||| || | Sbjct 3839288 TGGTGACAGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCTGTGATCTACGCCTTTG 3839229 Query 177160 TGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACC 177219 | || |||| ||| | ||||| ||||||| ||||||| || || | | || Sbjct 3839228 TCGGAGAGAGGTTCCGGGAGCACCTCCACCACTTTTTCCACAGGCACATGCTCCTGCCCC 3839169 Query 177220 TCTGCAAGTACATCCCCTTCCT 177241 | |||| ||||| || ||||| Sbjct 3839168 TGGGCAAATACATTCCATTCCT 3839147 Score = 266 bits (294), Expect = 4e-66 Identities = 548/802 (68%), Gaps = 25/802 (3%) Strand=Plus/Minus Query 9565 ACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCA 9624 || ||||| | ||| | |||||||| || ||||||||||| ||||| || || |||| Sbjct 3839934 ACCAACATCTACCTGCTCAACTTGGCCATTTCTGACTTGCTGTTTCTATTCACCCTGCCC 3839875 Query 9625 TTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAA 9684 || ||||| |||||| | | || | |||| ||| |||||| | | ||||||| Sbjct 3839874 TTCTGGATTCACTATGTCA-AGTGGA--ATGAGTGGGTTTTTGGCCATCGCATGTGTAAG 3839818 Query 9685 CTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTA 9744 ||||| || ||| ||||||| ||||| | || |||||| |||||||||||| Sbjct 3839817 TTGCTCTCCGGGTTGTATTACATGGGCTTGTACGGGGAGATCTTTTTCATCATCCTGCTG 3839758 Query 9745 ACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTA 9804 || ||||| | ||||| || | ||| | ||||| ||| || || | || || Sbjct 3839757 ACGATAGACCGATATCTGGCCATCGTCCACGCTGTGTTTGCCCTGCGGGCCCGGACCGTC 3839698 Query 9805 ACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCT 9864 || | ||| || | | | |||| |||||| ||||||||| || |||||||| Sbjct 3839697 ACTTTTGGTATCATAAGCAGTGTTCTCACCTGGGCCCTGGCAGGGCTGGCAGCCCTCCCT 3839638 Query 9865 GAATTTTTCTTTCATGGACACCAAGATGACAATGGT-AGGGTT----CAGTGTGATCCTT 9919 |||||| |||| |||| |||| | || ||| || ||| |||| | | ||| Sbjct 3839637 GAATTTATCTTCCATGAGTTCCAACAGGAGTCTGGACAGAGTTTCTGCAGT-TCA--CTT 3839581 Query 9920 ACTACCCAGAGATGTCTACAA--ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTAT 9977 ||||| ||| | | | | | |||| ||| |||| || | | ||| | | Sbjct 3839580 --TACCCGGAG--GACGAAGAGGACACCTGGAAGCGTTTTCACGCTGTGAGGATGAATGT 3839525 Query 9978 GTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAG 10037 || |||||| | |||||||||||||||||||||||||||| | ||| || | || Sbjct 3839524 CTTGGGTCTCACTCTGCCTCTGCTCATTATGGCTGTCTGCTATGCCGGAATCATTAAAAC 3839465 Query 10038 ACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCAT 10097 || | || ||||||| | ||| ||||| ||||||||| ||||||| ||| ||||||| Sbjct 3839464 CCTCATCAGATGCCCCAGTAGGAAAAAGTATAAGGCCATCCGGCTCATTTTTATCATCAT 3839405 Query 10098 GGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCA 10157 ||||| || ||| |||| ||| ||| |||||| | | |||||| || || | | ||| Sbjct 3839404 GGTGGTCTTTTTCATTTTCTGGGGACCTTACAACCTGGCTCTCCTTCTCTCCGCTTATCA 3839345 Query 10158 CGCAAC--CCTTCTT--AACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGC 10213 ||| |||||| | | | | |||| | ||||| | |||| |||| ||| Sbjct 3839344 ---AACGGTCTTCTTTGAGACCG-ACTGTGAACGGAGCAAACAGCTGGATGTGGCCATGC 3839289 Query 10214 TGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCG 10273 || | ||| | | |||||||| ||||| ||| ||||||| ||||||||||| || | Sbjct 3839288 TGGTGACAGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCTGTGATCTACGCCTTTG 3839229 Query 10274 TGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACC 10333 | || |||| ||| | ||||| ||||||| ||||||| || || | | || Sbjct 3839228 TCGGAGAGAGGTTCCGGGAGCACCTCCACCACTTTTTCCACAGGCACATGCTCCTGCCCC 3839169 Query 10334 TCTGCAAGTACATCCCCTTCCT 10355 | |||| ||||| || ||||| Sbjct 3839168 TGGGCAAATACATTCCATTCCT 3839147 >seq170 Length=9568404 Score = 178 bits (196), Expect = 2e-39 Identities = 143/173 (83%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||| |||| ||||||||| ||||||||||||||||| |||||||||||| Sbjct 9399134 AGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 9399075 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 |||||||| |||||||| | || | ||| |||||||||||||| ||||| ||| | || Sbjct 9399074 ACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCACCGTTCACC 9399015 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 |||||||||||||| ||| ||||| || || || |||||| ||||| || Sbjct 9399014 ACGTAGAACTGGCAAAGGGCATGGCACGGAGGTAGAGCCATGAGAGGCAGATC 9398962 >seq356 Length=1899616 Score = 156 bits (172), Expect = 5e-33 Identities = 130/157 (83%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 |||||||| ||||||| |||||| || || || |||||||| ||||||||||| | | | Sbjct 754574 CAGCGCCTGAGCCTCAGCCTGAGCGTCTTCAGGTTTTCCCCGAGGGAGTTCACGTGCTTC 754515 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || || | ||| ||| | |||| |||||||||||||||||||||| |||||||||| Sbjct 754514 TTGATCTC-TGGGTCCTG--GCTCTCAGCCTGGGGCATCACCTCCTCCAAGTAAAACTGG 754458 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 |||||||| |||| ||| ||||| ||||||||||||| Sbjct 754457 ATCATCTCCGACAAGGCTTGGCAACCCAGGTAACCCT 754421 Score = 105 bits (116), Expect = 8e-18 Identities = 78/91 (86%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 137926 TTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGCTC 137985 ||||||||| | ||||||||||| ||||||||||| |||||||| || ||||| ||| Sbjct 756764 TTTTTCATCCTCAGTGTCATGTAGGCTTCTATGTAGTTGATGAAGATATCGAACTCACTC 756705 Query 137986 ATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 ||||| |||||||||||||| || ||||||| Sbjct 756704 ATGGCTTTGTAGACCCCTTTCTCTTGGAGCT 756674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589608876473560