Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq35 250 3e-61
seq109 84.2 3e-11
>seq35
Length=5694442
Score = 250 bits (276), Expect = 3e-61
Identities = 258/338 (76%), Gaps = 0/338 (0%)
Strand=Plus/Minus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
||||| || || ||||| ||||| | | | | ||| | ||||| ||||||||||||||
Sbjct 1805146 AGCAGAGCTTCAATGTCAGGCTCAATGTCGATGGTGGGAAAGCGGCGGCTGTACCTGCGC 1805087
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|| ||| |||||| | ||||||| ||| || ||||||||||||| ||||||||||||
Sbjct 1805086 ACAGGCACGCCGTCCGGGCCCACCAGGAATTTTTCGAAGTTCCAGGAAACGTCGTTGCGG 1805027
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
|| || || |||||| |||| || ||||||| ||| ||||| | |||||| ||
Sbjct 1805026 CATACCGGGGACCAGATGATGAACTTGGGGTCGGTCATGAGCGCAGTGGCGTCGTCACTG 1804967
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
||||| ||||| | ||| || | ||| ||||| || || || ||| || || || |||
Sbjct 1804966 GGCGCGGGCAGAGTCTCCCGCAAGAAAGCGAAAAGGGGGTGCGCCTGAGCGCCATTCACC 1804907
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|||||||||||||||||| | ||||| |||||||| ||| ||||| ||||||| |||
Sbjct 1804906 TCGCACTTCTCGAAGAGCGTGAAGTTGGGCTCGAACCCGCCTCCAGGTCGGACGTACTTG 1804847
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394
||| || || ||| || | |||| |||||| |||||
Sbjct 1804846 AGGCAATTCAGGATTTCTTCGTTCTTGGCGTTCTCCTG 1804809
Score = 201 bits (222), Expect = 1e-46
Identities = 171/211 (81%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || ||||||||||||||||||||||| ||||| ||||| ||||| | || ||||
Sbjct 1804582 CCTGATGCCCGAACTGGTTACACGGGAACCCGAGCACGACCAGGCCCCGGGGCCCGAGGC 1804523
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
|||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||||| |
Sbjct 1804522 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCCA 1804463
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570
| ||||| ||||||| ||| |||||| | | |||| | | ||||||| || || || |
Sbjct 1804462 CATTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGTTCACAGGATCCCCGCCCG 1804403
Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601
| |||||| || |||||| | ||||| ||
Sbjct 1804402 CCAGCGGGCGCGCGGAGAAGTCATACACCGA 1804372
>seq109
Length=7372924
Score = 84.2 bits (92), Expect = 3e-11
Identities = 198/290 (68%), Gaps = 13/290 (4%)
Strand=Plus/Plus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| || |||| || |||| | ||| || |||||| ||||||||| ||| |||
Sbjct 4448293 GCAGCTTCGCAGCATCTACGAGAGCA-GCCTGTCTATAGGCAACTTCGCCTCGCGCCTGC 4448351
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| | | || || |||||||| || |||||||||| | ||| | |||||||
Sbjct 4448352 TGGTGCATCTCTTCCCCGAGCTCTTCACCCATGAGAACCTGCGGAAGCAGTACAACTGCA 4448411
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTC---CGGCAC 50584
|||||| |||||||| |||| || ||||| ||| | | |||| || |||
Sbjct 4448412 GTGGCTCCCTGGGCAAGAAGCAG-CTGGACCCATCCCGCAT---CAAGCTCATTCGCCAC 4448467
Query 50585 TATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTG 50644
|| |||||| |||| |||| ||| || || || || |||| |||| ||
Sbjct 4448468 TACGTGCAGCTGCTCTACCCCCGGGCCAAGAATGACCGTGTCTGGACGCTGGAGTTTGTG 4448527
Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693
| |||||||||||||||||||||| | |||||| || ||||||
Sbjct 4448528 GGCAAATTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 4448575
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608314031747560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |