Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq35 250 3e-61 seq109 84.2 3e-11 >seq35 Length=5694442 Score = 250 bits (276), Expect = 3e-61 Identities = 258/338 (76%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||| || || ||||| ||||| | | | | ||| | ||||| |||||||||||||| Sbjct 1805146 AGCAGAGCTTCAATGTCAGGCTCAATGTCGATGGTGGGAAAGCGGCGGCTGTACCTGCGC 1805087 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| |||||| | ||||||| ||| || ||||||||||||| |||||||||||| Sbjct 1805086 ACAGGCACGCCGTCCGGGCCCACCAGGAATTTTTCGAAGTTCCAGGAAACGTCGTTGCGG 1805027 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 || || || |||||| |||| || ||||||| ||| ||||| | |||||| || Sbjct 1805026 CATACCGGGGACCAGATGATGAACTTGGGGTCGGTCATGAGCGCAGTGGCGTCGTCACTG 1804967 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| ||||| | ||| || | ||| ||||| || || || ||| || || || ||| Sbjct 1804966 GGCGCGGGCAGAGTCTCCCGCAAGAAAGCGAAAAGGGGGTGCGCCTGAGCGCCATTCACC 1804907 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||| | ||||| |||||||| ||| ||||| ||||||| ||| Sbjct 1804906 TCGCACTTCTCGAAGAGCGTGAAGTTGGGCTCGAACCCGCCTCCAGGTCGGACGTACTTG 1804847 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || ||| || | |||| |||||| ||||| Sbjct 1804846 AGGCAATTCAGGATTTCTTCGTTCTTGGCGTTCTCCTG 1804809 Score = 201 bits (222), Expect = 1e-46 Identities = 171/211 (81%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||||||||||||||| ||||| ||||| ||||| | || |||| Sbjct 1804582 CCTGATGCCCGAACTGGTTACACGGGAACCCGAGCACGACCAGGCCCCGGGGCCCGAGGC 1804523 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||||| | Sbjct 1804522 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCCA 1804463 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| ||||||| ||| |||||| | | |||| | | ||||||| || || || | Sbjct 1804462 CATTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGTTCACAGGATCCCCGCCCG 1804403 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | |||||| || |||||| | ||||| || Sbjct 1804402 CCAGCGGGCGCGCGGAGAAGTCATACACCGA 1804372 >seq109 Length=7372924 Score = 84.2 bits (92), Expect = 3e-11 Identities = 198/290 (68%), Gaps = 13/290 (4%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| || |||| || |||| | ||| || |||||| ||||||||| ||| ||| Sbjct 4448293 GCAGCTTCGCAGCATCTACGAGAGCA-GCCTGTCTATAGGCAACTTCGCCTCGCGCCTGC 4448351 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| | | || || |||||||| || |||||||||| | ||| | ||||||| Sbjct 4448352 TGGTGCATCTCTTCCCCGAGCTCTTCACCCATGAGAACCTGCGGAAGCAGTACAACTGCA 4448411 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTC---CGGCAC 50584 |||||| |||||||| |||| || ||||| ||| | | |||| || ||| Sbjct 4448412 GTGGCTCCCTGGGCAAGAAGCAG-CTGGACCCATCCCGCAT---CAAGCTCATTCGCCAC 4448467 Query 50585 TATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTG 50644 || |||||| |||| |||| ||| || || || || |||| |||| || Sbjct 4448468 TACGTGCAGCTGCTCTACCCCCGGGCCAAGAATGACCGTGTCTGGACGCTGGAGTTTGTG 4448527 Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 | |||||||||||||||||||||| | |||||| || |||||| Sbjct 4448528 GGCAAATTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 4448575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608314031747560