Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq17446 84.2 2e-11 seq671 84.2 2e-11 >seq17446 Length=585 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||||||| | || ||||||||| || || || ||||| || || ||| ||||| Sbjct 15 GACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGAAAGCAACTGGAA 74 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||| | ||| | || |||||||| ||||| || || |||||||||||| | || || Sbjct 75 GATGGCCGAACCCTAGCGGATTACAACATTCAGAAAGAGTCTACTCTTCACCTCGTCTT 133 >seq671 Length=818080 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | || | ||| |||||||| |||||||| ||||| || ||||| Sbjct 168509 GATAAGGAAGGAATTCCTCCTGCTCAGCAAAGACTGATCTTTGCTGGCAAGCAGCTGGAA 168568 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||| ||| || | || ||||| ||||||||||| || |||||||| ||||||| Sbjct 168569 GATTGATGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTGGTGTT 168627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410479187190746