Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_001987.1
Length=108409
Score E
Sequences producing significant alignments: (Bits) Value
seq7730 154 1e-32
>seq7730
Length=1237
Score = 154 bits (170), Expect = 1e-32
Identities = 347/515 (67%), Gaps = 6/515 (1%)
Strand=Plus/Minus
Query 97119 GACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAG 97178
|||||| |||| || || || | || || || ||||||||||| || || || ||
Sbjct 831 GACATGAGCGAGGATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAG 772
Query 97179 TCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAA 97238
|||||||| ||||| | ||||| | ||||| ||||||| ||||| ||||||||
Sbjct 771 ACCCATATCGGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTTGTAACATAAAA 712
Query 97239 CTGACTCAATACATGA--CAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAA 97296
||| | ||| ||||| || || || | ||||| || || | |||||||
Sbjct 711 CTG-CGCAA-ACATGTGGCATGGAGGAAGTGCCATCAACTTAAGGTCAGAAGGATTCCAA 654
Query 97297 GCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTT 97356
|| |||| | || | || ||| || || | | || | ||||||| | |
Sbjct 653 GCCGACATTATTATCCGTCGATCATCAGGATTGTTCTTGATCTTGTTAATTACATCCGAG 594
Query 97357 AATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAA 97416
| ||||||| |||| ||| ||||| | | | || || | || |||||
Sbjct 593 AGCTGATCAAATCCTTGGCCAGTATAATCAGCATGCATATCTGTGTACTTAGCACCAAAG 534
Query 97417 TGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCA 97476
|| |||||||| ||||||||||| ||||||||||| ||||||||||| ||| | |||
Sbjct 533 TGTCTCCATTGAAATCCATAAACGGGTCCAAGGTCACCTTCTTCTCTCTCAGTCAGTCCA 474
Query 97477 AGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCA 97536
| ||| | ||| | || || |||| ||||||| || || | ||| | || |
Sbjct 473 ATACCATCAAGATAAGTTCTTGACGCATTCCCATCCCATATATGGATACCCTTTTCTTGA 414
Query 97537 AG-CTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCT 97595
|| |||||| | || || || || || ||||| | | ||| || |||||||||||
Sbjct 413 AGTAACTTTGC-ATTGGTTGAACCGCTTATGAACCAAAGAAGTTCCTCAACAACACCTCT 355
Query 97596 CCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAAT 97630
||| ||||||||||| || || | || |||||||
Sbjct 354 CCAGAATACTCTCTTTGTCGTCAGAAGTGGAAAAT 320
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346515879507230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |