Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq7730 154 1e-32 >seq7730 Length=1237 Score = 154 bits (170), Expect = 1e-32 Identities = 347/515 (67%), Gaps = 6/515 (1%) Strand=Plus/Minus Query 97119 GACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAG 97178 |||||| |||| || || || | || || || ||||||||||| || || || || Sbjct 831 GACATGAGCGAGGATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAG 772 Query 97179 TCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAA 97238 |||||||| ||||| | ||||| | ||||| ||||||| ||||| |||||||| Sbjct 771 ACCCATATCGGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTTGTAACATAAAA 712 Query 97239 CTGACTCAATACATGA--CAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAA 97296 ||| | ||| ||||| || || || | ||||| || || | ||||||| Sbjct 711 CTG-CGCAA-ACATGTGGCATGGAGGAAGTGCCATCAACTTAAGGTCAGAAGGATTCCAA 654 Query 97297 GCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTT 97356 || |||| | || | || ||| || || | | || | ||||||| | | Sbjct 653 GCCGACATTATTATCCGTCGATCATCAGGATTGTTCTTGATCTTGTTAATTACATCCGAG 594 Query 97357 AATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAA 97416 | ||||||| |||| ||| ||||| | | | || || | || ||||| Sbjct 593 AGCTGATCAAATCCTTGGCCAGTATAATCAGCATGCATATCTGTGTACTTAGCACCAAAG 534 Query 97417 TGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCA 97476 || |||||||| ||||||||||| ||||||||||| ||||||||||| ||| | ||| Sbjct 533 TGTCTCCATTGAAATCCATAAACGGGTCCAAGGTCACCTTCTTCTCTCTCAGTCAGTCCA 474 Query 97477 AGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCA 97536 | ||| | ||| | || || |||| ||||||| || || | ||| | || | Sbjct 473 ATACCATCAAGATAAGTTCTTGACGCATTCCCATCCCATATATGGATACCCTTTTCTTGA 414 Query 97537 AG-CTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCT 97595 || |||||| | || || || || || ||||| | | ||| || ||||||||||| Sbjct 413 AGTAACTTTGC-ATTGGTTGAACCGCTTATGAACCAAAGAAGTTCCTCAACAACACCTCT 355 Query 97596 CCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAAT 97630 ||| ||||||||||| || || | || ||||||| Sbjct 354 CCAGAATACTCTCTTTGTCGTCAGAAGTGGAAAAT 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346515879507230