Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq7730 176 7e-39
seq188 109 8e-19
seq17446 102 1e-16
seq10281 96.9 5e-15
seq19370 91.5 2e-13
>seq7730
Length=1237
Score = 176 bits (194), Expect = 7e-39
Identities = 325/476 (68%), Gaps = 3/476 (1%)
Strand=Plus/Minus
Query 205483 GCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTA 205542
|||| ||||| |||||||| | ||||||||| ||||| | |||||||||||||| | |
Sbjct 794 GCAATGTTAAACGGTACACCAAGACCCATATCGGCTGAGCGCTGATACATTTGACACGAA 735
Query 205543 AGATATTTATTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATA 205602
|| | | ||| ||| ||| ||| || |||| || || || || | ||||
Sbjct 734 AGCTCTCCATTTGTAA---CATAAAACTGCGCAAACATGTGGCATGGAGGAAGTGCCATC 678
Query 205603 TTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattt 205662
| || || ||||||||| || | | |||||| || | ||||| || ||
Sbjct 677 AACTTAAGGTCAGAAGGATTCCAAGCCGACATTATTATCCGTCGATCATCAGGATTGTTC 618
Query 205663 tttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCC 205722
|| || || || || | || | | |||||||||||||| ||||||| | || |
Sbjct 617 TTGATCTTGTTAATTACATCCGAGAGCTGATCAAATCCTTGGCCAGTATAATCAGCATGC 558
Query 205723 ATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCA 205782
||||| | || ||||||||||| || | ||||||||| |||||||| || || | |||
Sbjct 557 ATATCTGTGTACTTAGCACCAAAGTGTCTCCATTGAAATCCATAAACGGGTCCAAGGTCA 498
Query 205783 CCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaatgatccattttcatcc 205842
||||||| ||| ||| | | ||| | | ||| || ||| |||| |||||
Sbjct 497 CCTTCTTCTCTCTCAGTCAGTCCAATACCATCAAGATAAGTTCTTGACGCATTCCCATCC 438
Query 205843 caaatatggattcctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCAT 205902
|| |||||||| || || | || || | |||| ||| ||||| || ||| |||||
Sbjct 437 CATATATGGATACCCTTTTCTTGAAGTAACTTTGCATTGGTTGAACCGCTTATGAACCAA 378
Query 205903 AATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAA 205958
| | ||| ||||||| |||||||| || | | ||||| || | | ||||||
Sbjct 377 AGAAGTTCCTCAACAACACCTCTCCAGAATACTCTCTTTGTCGTCAGAAGTGGAAA 322
>seq188
Length=3215107
Score = 109 bits (120), Expect = 8e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | ||||| ||||||||||| || || || | ||| | | | |||
Sbjct 2830744 ATGCAGATCTTTGTGAAGACCCTAACAGGCAAGACCATCACACTTGAGGTCAAGCCCAAT 2830803
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | ||| ||||| ||| | || || || || |||||||| ||
Sbjct 2830804 GACACTATTGAGAATGTCAAAGCTAAAATCCAAAACAAGGAGGGCATCCCACCTGACCAG 2830863
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | || |||||||| || ||||| | |||||| | || || | ||| ||||||
Sbjct 2830864 CAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAAT 2830923
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || ||||| || ||| |||| | ||| | | | | || ||||||||
Sbjct 2830924 ATCCAGAAAGAGTCCACTCTGCACTCGGTGCTTCATCTGCGGGGTGGTAT 2830973
>seq17446
Length=585
Score = 102 bits (112), Expect = 1e-16
Identities = 91/114 (80%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682
||||| || || ||||||||||||||||| |||||||| ||||| || ||||| |||||
Sbjct 6 AAAATCCAGGACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGAAAG 65
Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736
||| | || ||| | ||||| ||| ||||| || ||||| ||||| || |||
Sbjct 66 CAACTGGAAGATGGCCGAACCCTAGCGGATTACAACATTCAGAAAGAGTCTACT 119
>seq10281
Length=966
Score = 96.9 bits (106), Expect = 5e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682
||||| ||||| ||||||||||| ||||| || || || | || || || || |||||
Sbjct 803 AAAATCCAAGACAAAGAAGGTATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGAAAG 862
Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742
|| | |||||| |||| ||||| | || || || || || ||||| || || | ||
Sbjct 863 CAGCTTGAGGATGGTCGCACATTGGCTGACTACAACATCCAGAAAGAGTCGACCCTCCAC 922
Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768
|||||| | ||| |||| ||||||||
Sbjct 923 TTGGTTCTTCGTCTACGTGGTGGTAT 948
>seq19370
Length=533
Score = 91.5 bits (100), Expect = 2e-13
Identities = 135/189 (71%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAATGATACAATTTCTAA 124612
|| || ||||| ||||| || || ||| | ||| | || |||| || || || ||
Sbjct 1 AAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGCAGC-GACACCATCGACAA 59
Query 124613 TTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTT 124672
| | || ||||||||||| || ||||| || || || ||||| || ||| | || ||
Sbjct 60 TGTCAAGGCCAAAATTCAAGACAAGGAAGGCATCCCTCCGGATCAGCAGAGGTTGATCTT 119
Query 124673 TGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATC 124732
|| |||||||| | |||||| | || || || | || || |||||||||||||||||
Sbjct 120 CGCCGGAAAACAGCTCGAGGATGGCCGTACCTTGGCCGACTACAATATTCAAAAAGAATC 179
Query 124733 AACTTTGCA 124741
|| ||||
Sbjct 180 TACACTGCA 188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 754856932835200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |