Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7730 176 7e-39 seq188 109 8e-19 seq17446 102 1e-16 seq10281 96.9 5e-15 seq19370 91.5 2e-13 >seq7730 Length=1237 Score = 176 bits (194), Expect = 7e-39 Identities = 325/476 (68%), Gaps = 3/476 (1%) Strand=Plus/Minus Query 205483 GCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTA 205542 |||| ||||| |||||||| | ||||||||| ||||| | |||||||||||||| | | Sbjct 794 GCAATGTTAAACGGTACACCAAGACCCATATCGGCTGAGCGCTGATACATTTGACACGAA 735 Query 205543 AGATATTTATTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATA 205602 || | | ||| ||| ||| ||| || |||| || || || || | |||| Sbjct 734 AGCTCTCCATTTGTAA---CATAAAACTGCGCAAACATGTGGCATGGAGGAAGTGCCATC 678 Query 205603 TTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattt 205662 | || || ||||||||| || | | |||||| || | ||||| || || Sbjct 677 AACTTAAGGTCAGAAGGATTCCAAGCCGACATTATTATCCGTCGATCATCAGGATTGTTC 618 Query 205663 tttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCC 205722 || || || || || | || | | |||||||||||||| ||||||| | || | Sbjct 617 TTGATCTTGTTAATTACATCCGAGAGCTGATCAAATCCTTGGCCAGTATAATCAGCATGC 558 Query 205723 ATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCA 205782 ||||| | || ||||||||||| || | ||||||||| |||||||| || || | ||| Sbjct 557 ATATCTGTGTACTTAGCACCAAAGTGTCTCCATTGAAATCCATAAACGGGTCCAAGGTCA 498 Query 205783 CCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaatgatccattttcatcc 205842 ||||||| ||| ||| | | ||| | | ||| || ||| |||| ||||| Sbjct 497 CCTTCTTCTCTCTCAGTCAGTCCAATACCATCAAGATAAGTTCTTGACGCATTCCCATCC 438 Query 205843 caaatatggattcctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCAT 205902 || |||||||| || || | || || | |||| ||| ||||| || ||| ||||| Sbjct 437 CATATATGGATACCCTTTTCTTGAAGTAACTTTGCATTGGTTGAACCGCTTATGAACCAA 378 Query 205903 AATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAA 205958 | | ||| ||||||| |||||||| || | | ||||| || | | |||||| Sbjct 377 AGAAGTTCCTCAACAACACCTCTCCAGAATACTCTCTTTGTCGTCAGAAGTGGAAA 322 >seq188 Length=3215107 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| ||||||||||| || || || | ||| | | | ||| Sbjct 2830744 ATGCAGATCTTTGTGAAGACCCTAACAGGCAAGACCATCACACTTGAGGTCAAGCCCAAT 2830803 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||| ||| | || || || || |||||||| || Sbjct 2830804 GACACTATTGAGAATGTCAAAGCTAAAATCCAAAACAAGGAGGGCATCCCACCTGACCAG 2830863 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || |||||||| || ||||| | |||||| | || || | ||| |||||| Sbjct 2830864 CAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAAT 2830923 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || ||| |||| | ||| | | | | || |||||||| Sbjct 2830924 ATCCAGAAAGAGTCCACTCTGCACTCGGTGCTTCATCTGCGGGGTGGTAT 2830973 >seq17446 Length=585 Score = 102 bits (112), Expect = 1e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| || || ||||||||||||||||| |||||||| ||||| || ||||| ||||| Sbjct 6 AAAATCCAGGACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGAAAG 65 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736 ||| | || ||| | ||||| ||| ||||| || ||||| ||||| || ||| Sbjct 66 CAACTGGAAGATGGCCGAACCCTAGCGGATTACAACATTCAGAAAGAGTCTACT 119 >seq10281 Length=966 Score = 96.9 bits (106), Expect = 5e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| ||||| ||||||||||| ||||| || || || | || || || || ||||| Sbjct 803 AAAATCCAAGACAAAGAAGGTATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGAAAG 862 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | |||||| |||| ||||| | || || || || || ||||| || || | || Sbjct 863 CAGCTTGAGGATGGTCGCACATTGGCTGACTACAACATCCAGAAAGAGTCGACCCTCCAC 922 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| | ||| |||| |||||||| Sbjct 923 TTGGTTCTTCGTCTACGTGGTGGTAT 948 >seq19370 Length=533 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 124554 AAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAATGATACAATTTCTAA 124612 || || ||||| ||||| || || ||| | ||| | || |||| || || || || Sbjct 1 AAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGCAGC-GACACCATCGACAA 59 Query 124613 TTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTT 124672 | | || ||||||||||| || ||||| || || || ||||| || ||| | || || Sbjct 60 TGTCAAGGCCAAAATTCAAGACAAGGAAGGCATCCCTCCGGATCAGCAGAGGTTGATCTT 119 Query 124673 TGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATC 124732 || |||||||| | |||||| | || || || | || || ||||||||||||||||| Sbjct 120 CGCCGGAAAACAGCTCGAGGATGGCCGTACCTTGGCCGACTACAATATTCAAAAAGAATC 179 Query 124733 AACTTTGCA 124741 || |||| Sbjct 180 TACACTGCA 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754856932835200