Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq65 100 5e-16 >seq65 Length=9174866 Score = 100 bits (110), Expect = 5e-16 Identities = 101/128 (79%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||| | |||||||| |||||||| ||||||||| | || || || Sbjct 3589827 GCATTTTTTGGAGCCCAGATGAATTCTTTCATCCATGTGATTATGTACTCATACTACGGG 3589886 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 || | || | |||||| ||| ||||| |||||||| ||||||||||| || | || | Sbjct 3589887 TTGACTGCGTTTGGTCC-ATGGATTCAG-AAGTATCTTTGGTGGAAACGATACTTGACCA 3589944 Query 52175 TAATGCAG 52182 | ||||| Sbjct 3589945 TGTTGCAG 3589952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922464716477560