Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq21504 116 4e-21 seq475 109 6e-19 seq560 100 3e-16 seq220 100 3e-16 seq604 98.7 1e-15 seq273 98.7 1e-15 seq188 98.7 1e-15 seq87 98.7 1e-15 seq58060 91.5 2e-13 seq10281 89.7 6e-13 >seq21504 Length=484 Score = 116 bits (128), Expect = 4e-21 Identities = 145/195 (74%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || |||| ||| || | || || |||||||| |||||||| Sbjct 433 TCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAG 374 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| |||| | ||| | | Sbjct 373 ATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCC-TGAATTTTGGCTTTCACGTT 315 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| |||| ||||| |||| ||||| || ||||| || || ||||| Sbjct 314 ATCAATGGTGTCAGAGCTC---TCCACTTCGAGGGTGATAGTCTTGCCTGTAAGGGTCTT 258 Query 43169 TACAAAGATTTGCAT 43183 || ||||||||||| Sbjct 257 GACGAAGATTTGCAT 243 >seq475 Length=1570329 Score = 109 bits (120), Expect = 6e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||||| |||| |||| || ||| || || || ||||| |||| Sbjct 1256106 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 1256047 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| || || || ||||| | ||||||||| | || Sbjct 1256046 AGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1255987 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||| ||| ||| || || | || | | |||||||| | ||||| Sbjct 1255986 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 1255927 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189 || | |||||||| ||||| || || ||||| || || ||||||||||| || Sbjct 1255926 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTTGAC 1255874 >seq560 Length=571364 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 253254 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 253195 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 253194 ATACTAACGAGGA 253182 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 271761 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 271702 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 271701 ATACTAACGAGGA 271689 >seq220 Length=1446099 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 516895 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 516836 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 516835 ATACTAACGAGGA 516823 >seq604 Length=510426 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 334088 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 334029 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 334028 TACTAACGAGGA 334017 >seq273 Length=4066651 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 896215 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 896274 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 896275 TACTAACGAGGA 896286 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 899582 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 899641 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 899642 TACTAACGAGGA 899653 >seq188 Length=3215107 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||| | |||| ||| ||| || || ||||| || || | ||||| || | || || Sbjct 2830953 CACCGAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTC 2830894 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||| || || || || || || ||||||||||| | || | || |||||||| Sbjct 2830893 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTTTTG 2830834 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 |||||| ||||| || | | ||||| | | | || || | |||||||| || Sbjct 2830833 GATTTTAGCTTTGACATTCTCAATAGTGTCATTGGGCTTGACCTCAAGTGTGATGGTCTT 2830774 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190 ||| ||||| ||||| |||||||| ||||| | |||| Sbjct 2830773 GCCTGTTAGGGTCTTCACAAAGATCTGCATCTCTACG 2830737 >seq87 Length=6336671 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 5590684 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5590743 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 5590744 TACTAACGAGGA 5590755 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 3696258 TTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 3696317 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 3696318 TATACTAACGAGGA 3696331 >seq58060 Length=210 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || ||||| ||||| ||||||| ||| || |||| || |||||||| |||||||| Sbjct 159 CTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCGTCCTCAAGCTGCTTCCCAGCGAA 100 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||||| ||||||||||| | || | || ||||||||| ||| || Sbjct 99 GATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTT 52 >seq10281 Length=966 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| ||||| || | || |||||| || || ||||| ||||||| |||||| | Sbjct 706 ACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCGGCC 647 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || || || || | || |||||| || | || | || || || Sbjct 646 GTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGGGATGCCTTCTTT 587 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTC---GCTCGATTCCACATCGACCG 43143 ||| |||||| ||| | ||| | | | || || |||| ||||| || | | Sbjct 586 GTCTTGGATTTTGGCTTTCA-CGTTGTCGATGGTATCAGAGCTC---TCCACCTCCAAAG 531 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || ||||| | || || |||||||||||||| Sbjct 530 TAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||| ||||||| || || | || || |||||||| |||||||| Sbjct 910 CTCTTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 851 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | | || ||||| |||||| |||| ||| Sbjct 850 GATGAGACGCTGCTGGTCCGGTGGGATACCTTCTTTGTCTTGGATTTTAGCCTTGA-CGT 792 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | || || ||| || || || | |||||||| || ||||| || |||| Sbjct 791 TGTCGATAGTATCAGAACTC---TCGACCTCCAGAGTGATGGTCTTCCCCGTAAGGGTCT 735 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||| ||||| Sbjct 734 TGACGAAGATCTGCAT 719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571364155790920