Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq21504 116 4e-21
seq475 109 6e-19
seq560 100 3e-16
seq220 100 3e-16
seq604 98.7 1e-15
seq273 98.7 1e-15
seq188 98.7 1e-15
seq87 98.7 1e-15
seq58060 91.5 2e-13
seq10281 89.7 6e-13
>seq21504
Length=484
Score = 116 bits (128), Expect = 4e-21
Identities = 145/195 (74%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| || || ||||| || |||| ||| || | || || |||||||| ||||||||
Sbjct 433 TCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAG 374
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111
||||| ||||||||||| | || | || |||||||||| ||| |||| | ||| | |
Sbjct 373 ATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCC-TGAATTTTGGCTTTCACGTT 315
Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168
| | ||||| |||| ||||| |||| ||||| || ||||| || || |||||
Sbjct 314 ATCAATGGTGTCAGAGCTC---TCCACTTCGAGGGTGATAGTCTTGCCTGTAAGGGTCTT 258
Query 43169 TACAAAGATTTGCAT 43183
|| |||||||||||
Sbjct 257 GACGAAGATTTGCAT 243
>seq475
Length=1570329
Score = 109 bits (120), Expect = 6e-19
Identities = 164/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| || || | ||||| |||| |||| || ||| || || || ||||| ||||
Sbjct 1256106 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 1256047
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| || | || || |||||||| || || || ||||| | ||||||||| | ||
Sbjct 1256046 AGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1255987
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || |||||| ||| ||| || || | || | | |||||||| | |||||
Sbjct 1255986 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 1255927
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189
|| | |||||||| ||||| || || ||||| || || ||||||||||| ||
Sbjct 1255926 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTTGAC 1255874
>seq560
Length=571364
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 253254 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 253195
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 253194 ATACTAACGAGGA 253182
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 271761 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 271702
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 271701 ATACTAACGAGGA 271689
>seq220
Length=1446099
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 516895 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 516836
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 516835 ATACTAACGAGGA 516823
>seq604
Length=510426
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 334088 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 334029
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 334028 TACTAACGAGGA 334017
>seq273
Length=4066651
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 896215 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 896274
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 896275 TACTAACGAGGA 896286
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 899582 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 899641
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 899642 TACTAACGAGGA 899653
>seq188
Length=3215107
Score = 98.7 bits (108), Expect = 1e-15
Identities = 152/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
|||| | |||| ||| ||| || || ||||| || || | ||||| || | || ||
Sbjct 2830953 CACCGAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCCTC 2830894
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
||||| || || || || || || ||||||||||| | || | || ||||||||
Sbjct 2830893 CAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTTTTG 2830834
Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
|||||| ||||| || | | ||||| | | | || || | |||||||| ||
Sbjct 2830833 GATTTTAGCTTTGACATTCTCAATAGTGTCATTGGGCTTGACCTCAAGTGTGATGGTCTT 2830774
Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190
||| ||||| ||||| |||||||| ||||| | ||||
Sbjct 2830773 GCCTGTTAGGGTCTTCACAAAGATCTGCATCTCTACG 2830737
>seq87
Length=6336671
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 5590684 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5590743
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 5590744 TACTAACGAGGA 5590755
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||
Sbjct 3696258 TTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 3696317
Query 60124 TATACTACCGAGGA 60137
||||||| ||||||
Sbjct 3696318 TATACTAACGAGGA 3696331
>seq58060
Length=210
Score = 91.5 bits (100), Expect = 2e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
||| || ||||| ||||| ||||||| ||| || |||| || |||||||| ||||||||
Sbjct 159 CTCTTTCTGAATGTTGTAGTCAGCCAAAGTGCGACCGTCCTCAAGCTGCTTCCCAGCGAA 100
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099
||||| ||||||||||| | || | || ||||||||| ||| ||
Sbjct 99 GATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTT 52
>seq10281
Length=966
Score = 89.7 bits (98), Expect = 6e-13
Identities = 154/220 (70%), Gaps = 8/220 (4%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
|||||| ||||| || | || |||||| || || ||||| ||||||| |||||| |
Sbjct 706 ACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCGGCC 647
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || |||||||| || || || || | || |||||| || | || | || || ||
Sbjct 646 GTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGGGATGCCTTCTTT 587
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTC---GCTCGATTCCACATCGACCG 43143
||| |||||| ||| | ||| | | | || || |||| ||||| || | |
Sbjct 586 GTCTTGGATTTTGGCTTTCA-CGTTGTCGATGGTATCAGAGCTC---TCCACCTCCAAAG 531
Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || || || ||||| | || || ||||||||||||||
Sbjct 530 TAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491
Score = 82.4 bits (90), Expect = 9e-11
Identities = 138/196 (70%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
||| || || || ||||| ||||||| || || | || || |||||||| ||||||||
Sbjct 910 CTCTTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCAAGCTGCTTTCCAGCGAA 851
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||| | || | | || ||||| |||||| |||| |||
Sbjct 850 GATGAGACGCTGCTGGTCCGGTGGGATACCTTCTTTGTCTTGGATTTTAGCCTTGA-CGT 792
Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167
| | | || || ||| || || || | |||||||| || ||||| || ||||
Sbjct 791 TGTCGATAGTATCAGAACTC---TCGACCTCCAGAGTGATGGTCTTCCCCGTAAGGGTCT 735
Query 43168 TTACAAAGATTTGCAT 43183
| || ||||| |||||
Sbjct 734 TGACGAAGATCTGCAT 719
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571364155790920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |