Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq273 114 8e-21 seq683 109 4e-19 seq475 107 1e-18 seq29432 98.7 6e-16 seq19201 96.9 2e-15 seq188 91.5 1e-13 seq10281 86.0 4e-12 seq19370 82.4 5e-11 >seq273 Length=4066651 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | ||| |||||||| ||||||||||||||||| || |||| Sbjct 887203 CAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTC 887262 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||||||| ||||| || || || | || ||||||||| ||| | || ||| ||||| Sbjct 887263 TTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTC 887322 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | || | || | | || || |||| |||||||| Sbjct 887323 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 887382 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| | || ||||||||||||||||| Sbjct 887383 CTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 887415 >seq683 Length=758919 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| | ||| |||||||| ||||| ||||| || Sbjct 117125 CCACCCCGCAGACAAAGCACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGAG 117184 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||| ||||| || ||||| || |||||||||| || Sbjct 117185 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGG 117244 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| || ||| ||||| | || | || | || | | | ||| Sbjct 117245 ATGCCCTCCTTGTCTTGGAT-TTTGGCTTTGACATTTTCAATAGTGTCACTGGGCTTGAC 117303 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | |||||||| ||||| || || ||||||||||||||||||||| || Sbjct 117304 CTCGAGTGTGATGGTCTTGCCCGTCAGGGTTTTCACAAAGATCTGCATCTCT 117355 >seq475 Length=1570329 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | ||| | ||| |||||||| | || |||||||| ||||||||||| || Sbjct 1256106 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 1256047 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| || || ||||||| ||||||||| ||| Sbjct 1256046 AGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1255987 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || ||||| ||| | || | || | ||| | | || || Sbjct 1255986 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 1255927 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || ||||| || || ||||| Sbjct 1255926 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCAT 1255880 >seq29432 Length=351 Score = 98.7 bits (108), Expect = 6e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 ||||||| ||| || || | || ||||||||| ||||||||||| | || ||| Sbjct 121 AGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCCAAAGTACGC 180 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 |||| || | ||| || || ||||| || | |||||||| || || | | || Sbjct 181 CCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAGGGATTCCTTCT 240 Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351 ||||| ||||| ||| | || | | || | || | || ||||| || | ||| Sbjct 241 TTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTG 300 Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| |||||||| || |||||||| |||||||||||| Sbjct 301 ATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATC 339 >seq19201 Length=536 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTC-GTCGTCCAACTGCTTGCCTGCGAA 34257 || ||||| |||||||| || | || || | || ||| |||| |||||| || ||||| Sbjct 315 TCCTTCTGGATGTTGTAATCCGCGAG-TGTCCTTCCGTCTTCCAGCTGCTTCCCCGCGAA 373 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || ||||||||||| || || | | |||||||| ||||| ||| | || Sbjct 374 TATCAGCCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATT 433 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | |||| |||| |||||| || || | || || || || || || || |||||||| Sbjct 434 GTCGATCGTGTCGGACGATTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCAC 493 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 494 AAAGATCTGCAT 505 >seq188 Length=3215107 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 |||||| ||| | ||| |||||||| || || ||||| || || ||| | || Sbjct 2830955 AGCACCGAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCC 2830896 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| ||||| || ||||| || ||||||||||| || | || |||||||| Sbjct 2830895 TCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTTT 2830836 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | || | || | || | | | ||| || | |||||||| Sbjct 2830835 TGGAT-TTTAGCTTTGACATTCTCAATAGTGTCATTGGGCTTGACCTCAAGTGTGATGGT 2830777 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 ||||| || || || |||||||||||||||||| || Sbjct 2830776 CTTGCCTGTTAGGGTCTTCACAAAGATCTGCATCTCT 2830740 >seq10281 Length=966 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || |||| ||| | || |||||||| ||||||||||||| | Sbjct 261 CCACCACGGAGCCTGAGGACCAAGTGGAGCGTGGACTCTTTCTGGATGTTGTAGTCGGCC 202 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 | ||| |||| || | ||| ||||| ||||| || |||| |||||||| || |||| Sbjct 201 AAAGTTCGGCCGTCTTCGAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGG 142 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||||| || | | | | || | || | ||| || Sbjct 141 -ATGCCTTCCTTATCCTGGATCTTGACTTTAACGTTGTCGATGGTGTCAGAGCTTTCCAC 83 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || ||||||||||| || | ||| |||||||| Sbjct 82 CTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTAATGAAGGTCTGCATC 34 >seq19370 Length=533 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 ||||||||||| ||||| | ||| |||||| || || |||||||||| || |||| Sbjct 203 AGCCTCAGCACAAGGTGCAGTGTAGATTCTTTTTGAATATTGTAGTCGGCCAAGGTACGG 144 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 | || || | ||| || || ||||| || | || |||||| || || | || ||| Sbjct 143 CCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGGATGCCTTCC 84 Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351 ||||| || || ||| | || | | || | ||| | ||||| || | ||| Sbjct 83 TTGTCTTGAATTTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGAGTG 24 Query 34352 ATGGTTTTGCCGGTGAGAGTTTT 34374 ||||| |||||||| || ||||| Sbjct 23 ATGGTCTTGCCGGTTAGGGTTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322822212743840