Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq273 114 8e-21
seq683 109 4e-19
seq475 107 1e-18
seq29432 98.7 6e-16
seq19201 96.9 2e-15
seq188 91.5 1e-13
seq10281 86.0 4e-12
seq19370 82.4 5e-11
>seq273
Length=4066651
Score = 114 bits (126), Expect = 8e-21
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236
||| |||||||| | ||| |||||||| ||||||||||||||||| || ||||
Sbjct 887203 CAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTC 887262
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
|||||||| ||||| || || || | || ||||||||| ||| | || ||| |||||
Sbjct 887263 TTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTC 887322
Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
||||| ||| | || | || | || | | || || |||| ||||||||
Sbjct 887323 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 887382
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| ||||| | || |||||||||||||||||
Sbjct 887383 CTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 887415
>seq683
Length=758919
Score = 109 bits (120), Expect = 4e-19
Identities = 165/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||||||| ||| | ||| |||||||| ||||| ||||| ||
Sbjct 117125 CCACCCCGCAGACAAAGCACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGAG 117184
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || |||| ||| ||||| || ||||| || |||||||||| ||
Sbjct 117185 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGG 117244
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || ||||||||| || ||| ||||| | || | || | || | | | |||
Sbjct 117245 ATGCCCTCCTTGTCTTGGAT-TTTGGCTTTGACATTTTCAATAGTGTCACTGGGCTTGAC 117303
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
|| | |||||||| ||||| || || ||||||||||||||||||||| ||
Sbjct 117304 CTCGAGTGTGATGGTCTTGCCCGTCAGGGTTTTCACAAAGATCTGCATCTCT 117355
>seq475
Length=1570329
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || | ||| | ||| |||||||| | || |||||||| ||||||||||| ||
Sbjct 1256106 CCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 1256047
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || |||| ||||||||| || || ||||||| ||||||||| |||
Sbjct 1256046 AGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 1255987
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || |||||| || ||||| ||| | || | || | ||| | | || ||
Sbjct 1255986 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 1255927
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||| ||||| || || || ||||| || || |||||
Sbjct 1255926 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCAT 1255880
>seq29432
Length=351
Score = 98.7 bits (108), Expect = 6e-16
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231
||||||| ||| || || | || ||||||||| ||||||||||| | || |||
Sbjct 121 AGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCCAAAGTACGC 180
Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291
|||| || | ||| || || ||||| || | |||||||| || || | | ||
Sbjct 181 CCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAGGGATTCCTTCT 240
Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351
||||| ||||| ||| | || | | || | || | || ||||| || | |||
Sbjct 241 TTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTG 300
Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
||||| |||||||| || |||||||| ||||||||||||
Sbjct 301 ATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATC 339
>seq19201
Length=536
Score = 96.9 bits (106), Expect = 2e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTC-GTCGTCCAACTGCTTGCCTGCGAA 34257
|| ||||| |||||||| || | || || | || ||| |||| |||||| || |||||
Sbjct 315 TCCTTCTGGATGTTGTAATCCGCGAG-TGTCCTTCCGTCTTCCAGCTGCTTCCCCGCGAA 373
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
|| ||||||||||| || || | | |||||||| ||||| ||| | ||
Sbjct 374 TATCAGCCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATT 433
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| | |||| |||| |||||| || || | || || || || || || || ||||||||
Sbjct 434 GTCGATCGTGTCGGACGATTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCAC 493
Query 34378 AAAGATCTGCAT 34389
||||||||||||
Sbjct 494 AAAGATCTGCAT 505
>seq188
Length=3215107
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|||||| ||| | ||| |||||||| || || ||||| || || ||| | ||
Sbjct 2830955 AGCACCGAGTGCAGAGTGGACTCTTTCTGGATATTATAGTCTGAGAGAGTGCGGCCATCC 2830896
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| ||| ||||| || ||||| || ||||||||||| || | || ||||||||
Sbjct 2830895 TCCAGCTGTTTGCCCGCAAAAATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTTT 2830836
Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
|| ||| ||||| | || | || | || | | | ||| || | ||||||||
Sbjct 2830835 TGGAT-TTTAGCTTTGACATTCTCAATAGTGTCATTGGGCTTGACCTCAAGTGTGATGGT 2830777
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393
||||| || || || |||||||||||||||||| ||
Sbjct 2830776 CTTGCCTGTTAGGGTCTTCACAAAGATCTGCATCTCT 2830740
>seq10281
Length=966
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || || ||||| || |||| ||| | || |||||||| ||||||||||||| |
Sbjct 261 CCACCACGGAGCCTGAGGACCAAGTGGAGCGTGGACTCTTTCTGGATGTTGTAGTCGGCC 202
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281
| ||| |||| || | ||| ||||| ||||| || |||| |||||||| || ||||
Sbjct 201 AAAGTTCGGCCGTCTTCGAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGG 142
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || ||||| || ||||| || | | | | || | || | ||| ||
Sbjct 141 -ATGCCTTCCTTATCCTGGATCTTGACTTTAACGTTGTCGATGGTGTCAGAGCTTTCCAC 83
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| | ||||| || || ||||||||||| || | ||| ||||||||
Sbjct 82 CTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTAATGAAGGTCTGCATC 34
>seq19370
Length=533
Score = 82.4 bits (90), Expect = 5e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231
||||||||||| ||||| | ||| |||||| || || |||||||||| || ||||
Sbjct 203 AGCCTCAGCACAAGGTGCAGTGTAGATTCTTTTTGAATATTGTAGTCGGCCAAGGTACGG 144
Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291
| || || | ||| || || ||||| || | || |||||| || || | || |||
Sbjct 143 CCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGGATGCCTTCC 84
Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351
||||| || || ||| | || | | || | ||| | ||||| || | |||
Sbjct 83 TTGTCTTGAATTTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGAGTG 24
Query 34352 ATGGTTTTGCCGGTGAGAGTTTT 34374
||||| |||||||| || |||||
Sbjct 23 ATGGTCTTGCCGGTTAGGGTTTT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322822212743840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |