Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq88 1777 0.0 seq123 114 9e-21 >seq88 Length=4186399 Score = 1777 bits (1970), Expect = 0.0 Identities = 1413/1704 (83%), Gaps = 43/1704 (3%) Strand=Plus/Minus Query 107087 CAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACAAGGG------- 107139 |||||||| || | ||||||| |||||||| ||| |||| | ||||| Sbjct 696601 CAGCATGATCAGGTAATTTGCAGGGTCAGGTTAGAGACCTCCAGCAGCAAGGCAGGTATA 696542 Query 107140 ------TCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTAC 107193 || || ||||| |||||||| ||||||||||||| |||||| || ||| ||| | Sbjct 696541 AGAGGTTCCTAAGCAGGTCTTGACTGTGGATATTTGTCTAGAGAAGAAATATATTTTTGC 696482 Query 107194 CATCACTCTGGAGTTGAACTTGATGTTC--------------TGGATTAGTTTGTAATTA 107239 |||||| |||||||||||||||||||| || ||||||||||||| Sbjct 696481 TATCACTTTGGAGTTGAACTTGATGTTCCTGGGAACACATTTAGGGTTAGTTTGTAATTG 696422 Query 107240 AAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCTCCT 107299 |||| |||||||||||||||||||| | |||| | ||| ||||||| ||||| || | Sbjct 696421 AAGGTATTTTGTTCTGTCCAAGGATTCCATCCTTCTTCTTCCCTGTGCTCAAACACTACC 696362 Query 107300 GATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCT 107359 ||||| |||| ||||||||||| | ||||||||||||| || |||| | | | || Sbjct 696361 GATCTTCCATTCCATGAAGATGATTTGGTGGAAGAAGAAACTCTGCCAGAAGTACTACCT 696302 Query 107360 GTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTT 107419 |||||| |||||||||||| | ||||||||| |||| ||||||||||||| ||||| || Sbjct 696301 GTGGGCTCTGGGCTGCTATTTCCTGCTGGCCATTGTCGCTCTGAGACTTTCTCTCAGATT 696242 Query 107420 TAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAG 107479 |||||||| | |||||| |||||||||||||| || |||| | || |||||||||| Sbjct 696241 GAAATGTGACTTTGATTCCCTGGATCTGGAGTCCGGGAACTTTCGAAGCAAGCACTGTAG 696182 Query 107480 GGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGAT 107539 |||||| |||||||| ||||||| ||||||||| ||||| ||| ||||||||| | || Sbjct 696181 GGACATCTTGTACAAGTCCCTGAAGTTGCCAGCAAGGAGATTCATGAACTGTTCTAGAAT 696122 Query 107540 CACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAA 107599 || | ||| ||||||||||||||| |||| ||||| ||||||||||| || ||||| Sbjct 696121 CATCCAAGGAGACCAGGAAGCAGTGACGGAGGCTCTCCTGGACAACCTGGATGTCAAGAA 696062 Query 107600 AAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTT 107659 |||||| |||| |||| | |||| | ||||||||||| |||||||||||||||| ||| Sbjct 696061 GAAGCGGAAGCCTTTCACAGACACCGACTACCTCAACATGACCAGAGACTGTGAGCACTT 696002 Query 107660 CAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCAT 107719 |||||| |||||||||||||||||| |||||| || ||||||||| |||||||||| || Sbjct 696001 TAAGGCCAAAAGGAAGTTCATACAGTACCCACTCAGCAAAGAAGAGGTAGACTTCCCTAT 695942 Query 107720 TGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGT 107779 ||| | ||| |||||||||||||||||||||||||| |||||| |||||||| |||| || Sbjct 695941 TGCATTCTCTATGGTGGTCCATGAGAAGATTGAAAATTTTGAAAGGCTGCTGAGAGCTGT 695882 Query 107780 GTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAA 107839 ||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||| Sbjct 695881 GTATGCCCCTCAGAACATATATTGTGTCCACGTGGATGAGAAGTCCCCAGAAACTTTCAA 695822 Query 107840 AGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGT 107899 |||||| |||||||| |||||||| |||||||| ||||||||||| |||||||||||||| Sbjct 695821 AGAGGCAGTCAAGGCAATTATTTCATGCTTCCCAAATGTCTTCATAGCCAGTAAGTTGGT 695762 Query 107900 CCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTT 107959 | |||||||||||||||||||| || ||||| ||||||||||| |||||||||||||| Sbjct 695761 TCGGGTGGTTTATGCCTCCTGGTTTAGGGTGCAGGCTGACCTGAATTGTATGGAAGACTT 695702 Query 107960 GCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCAT 108019 |||||||||||||||||||||||| ||||| |||||||| || || |||||||| || || Sbjct 695701 GCTCCAGAGCTCAGTGCCATGGAAATACTTCCTGAATACTTGTGGAACAGACTTTCCTAT 695642 Query 108020 AAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGA 108079 ||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||| Sbjct 695641 GAAGACCAATGCCGAGATCGTCCTGGCCCTCAAGATGTTGAATGGGAAGAATAGTATGGA 695582 Query 108080 GTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGA 108139 ||| ||| ||||| |||| |||||||| |||||||||||||| ||||||||||||||| Sbjct 695581 GTCAGAGATACCTAGTGAGACCAAAAAATCTCGCTGGAAATACCACTATGAGGTGACAGA 695522 Query 108140 CACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCAC 108199 |||| | | || ||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 695521 CACAATATCCCAAACCAGCAAGATGAAGGACCCTCCCCCTTATAATTTACCTATGTTCAC 695462 Query 108200 AGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA 108259 ||||||||||| ||||||| ||||||| |||||||||||| |||||||| ||||| || Sbjct 695461 GGGGAATGCCTACATTGTGGCTTCTCGAGGCTTTGTCCAACAAGTCTTAGAGAACCCCAA 695402 Query 108260 ATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGC 108319 ||| ||| |||| | |||||||| |||||||||||||||||||| |||||||||||||| Sbjct 695401 ATCACAACAACTGATCGAATGGGTAAAAGACACCTATAGCCCCGATGAACACCTCTGGGC 695342 Query 108320 CACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACAT 108379 ||||||||||||||| || |||||||||||||| |||| ||||||||||| ||||| Sbjct 695341 CACCCTTCAGCGTGCACCATGGATGCCTGGCTCCATTCCCTACCACCCCAAGTTTCACAC 695282 Query 108380 CTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAG 108439 ||||||||| ||||||| |||||||| ||||||||||||| || || ||||| |||| Sbjct 695281 TTCAGACATGGCTGCCATTGCCAGGCTGGTCAAGTGGCAGTGGCATGAAGGAGACATCAG 695222 Query 108440 CATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGG 108499 | |||||| ||||||| ||| |||||||||| ||| | | ||| ||||||||||| || Sbjct 695221 TAAGGGGGCACCTTATGGACCTTGCTCTGGAACCCACCAGCGGGGTATCTGCATTTATGG 695162 Query 108500 GGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCC 108559 || ||||||||| |||||||||| | |||| |||||| ||||| |||||||||||||| Sbjct 695161 GGTTGGGGACCTGCACTGGATTCTTCGTAACCCTCACCTGTTGGCCAACAAGTTTGACCC 695102 Query 108560 GAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTA 108619 | ||||||||||| || || |||||||||||||||||| ||||| ||||||||||||| Sbjct 695101 CAAAGTGGATGATAATGTTCTTCAGTGCTTAGAAGAGTACTTACGTTATAAGGCCATCTA 695042 Query 108620 TGGGACTGAACTTTGAG--------------CTGCACTGTGGGCCAGGGAC-TGTGCCAA 108664 |||||||||||| |||| ||| ||||||| |||| || ||||| || Sbjct 695041 TGGGACTGAACTCTGAGATACATATGAGAGATTGCCCTGTGGGGCAGGAACATGTGCAAA 694982 Query 108665 CATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGGC 108724 ||| ||||| || || | || ||| ||||||| ||| |||||| |||||||| |||| Sbjct 694981 CATACCCAGACTGTCCTAGGACAGTG-AGGGTGGGAGACTAGGGCTCTGGAATCCCTGGC 694923 Query 108725 ATCCCCCAGGGTCAGAGGGCTGCT 108748 |||| ||||||| |||||||||| Sbjct 694922 ATCCGCCAGGGTAGGAGGGCTGCT 694899 >seq123 Length=7988377 Score = 114 bits (126), Expect = 9e-21 Identities = 566/886 (64%), Gaps = 29/886 (3%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| | | || || || || || || || ||||| ||| | || Sbjct 3431470 CCCCTTAGTAAAGAAGAGGAAAAGTTTCCAATAGCATATTCCATAGTGGTTCATCACAAA 3431529 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| || | ||| | ||| |||||||| | || || | Sbjct 3431530 ATTGAAATGCTTGACAGGCTCTTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 3431589 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || ||||| || || || | || | ||||| | |||| ||||| Sbjct 3431590 CATGTGGACAAAAAATCAGAGGATTCCTTTTTGGCTGCGGTACTTGGCATTGCATCCTGT 3431649 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| ||| ||||| |||||||| || ||| | ||||| || || || ||| | Sbjct 3431650 TTCAGCAACGTCTTTGTGGCCAGTCAGCTGGAGACTGTGGTGTACGCATCGTGGAGTCGG 3431709 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || || || || ||||||||| | ||| | || | || | ||||| ||||||| Sbjct 3431710 GTTCAGGCCGATCTCAACTGTATGCAGGACCT-CTACCGAA-TGAGTGCAGACTGGAAGT 3431767 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| || || | || || || || || ||||| || || || | Sbjct 3431768 ACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTTGGGA 3431827 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102 |||||| ||| ||||| | |||| | || ||||| | || || | | Sbjct 3431828 AACTCAAGTCGTTAAAGGGAGAAAACAACCTAGAAACTGAGAAAATGCCATCCAAT---A 3431884 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAG---GTGACAGACACACTGTACCCTACCAGCA 108159 ||||| | | |||||| | | |||| || | | | |||| || ||| Sbjct 3431885 AAAAAGAAAGGTGGAAAAAGCACTATACCATTGTTAATGGAAAACTG-ACAAACACAGGG 3431943 Query 108160 A--GATGAAGGAC--CCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTT 108215 | || || || ||||| | ||| | ||| |||| |||| | |||||||||| Sbjct 3431944 ACTGACAAACTACAGCCTCCTCTTGAAAC---ACCTCTGTTTTCAGGCAGTGCCTATTTT 3432000 Query 108216 GTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTT 108275 |||| | | | | ||| | |||| |||| || ||| ||||| | | Sbjct 3432001 GTGGTCAGTAGGAATTATGTGGAGTATGTGCTAGAGAATGAAAAAATCCAAAAGTTTATG 3432060 Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || |||| |||||||| || ||||| || || | ||||||||||| ||||| | | | Sbjct 3432061 GAGTGGGCAAAAGACACATACAGCCCAGATGAGTATCTCTGGGCCACTATTCAGAG-GAT 3432119 Query 108336 CCGTGGA-TGCCTGGCTC--TGTTCCTA-GCCACCCCAAGTATCACATCTCAGACATGAC 108391 || || | | || ||||| ||| |||| |||| |||||| |||| || |||||| Sbjct 3432120 CCCTGAAGTTCCAGGCTCACTGTCCCTAAGCCAT---AAGTATGACATGTCCGACATGCA 3432176 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 ||| || || ||| | ||||||||||||||| || || ||||| || ||| || || Sbjct 3432177 TGCAATTGCTAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTTTCCAAGGGCGCCCC 3432236 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 || | |||||| || |||| | | | || ||| || || || ||| | Sbjct 3432237 CTACCCGCCCTGCAACGGTGTCCACATACGCTCTGTGTGTGTTTTTGGAGCAGGTGACTT 3432296 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | ||||||| | | || || ||| | || || || ||||||||| Sbjct 3432297 GAACTGGATGTTGCGCAAGCACCACTTGTTTGCTAATAAGTTTGAC 3432342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347999531515086