Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq25626 129 5e-25
seq273 125 6e-24
seq61295 107 2e-18
seq475 107 2e-18
seq21504 104 2e-17
seq10281 98.7 8e-16
>seq25626
Length=405
Score = 129 bits (142), Expect = 5e-25
Identities = 146/193 (76%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGT-TCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203
|||||||||||||||||||||| | || || || |||| || || || || |||||||
Sbjct 321 CTCCTTCTGAATGTTGTAGTCGGCTAAGGTG-CGGCCGTCTTCAAGCTGCTTCCCGGCGA 263
Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263
| ||||| | ||| ||||| ||||| | ||||||||||||| ||| || ||| ||
Sbjct 262 AGATCAATCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTAGCCTTGACGT 203
Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323
| | | |||| | ||| ||||||| ||||| ||||| || || ||||||||||
Sbjct 202 TATCAATGGTGTCTGAGCTCTCAACCTCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCA 143
Query 45324 CAAAGATTTGCAT 45336
||||||| |||||
Sbjct 142 CAAAGATCTGCAT 130
>seq273
Length=4066651
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| || ||||| | | |||| |||||| ||| ||| ||||| |||||||||||| |
Sbjct 887189 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 887248
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| ||| |||| |||| ||||| ||||| || ||||||| ||| ||||| || ||
Sbjct 887249 AGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 887308
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| ||||| ||||| || || ||| || | | | | |||| | |||||||
Sbjct 887309 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 887368
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| ||| || ||||| || |||| |||||||||||||| |||||
Sbjct 887369 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 887415
>seq61295
Length=203
Score = 107 bits (118), Expect = 2e-18
Identities = 118/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 45180 CGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCT 45239
|||| || || || || |||||||| ||||||| ||| ||||| ||||| | ||||||||
Sbjct 193 CGTCTTCAAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCCT 134
Query 45240 TGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAA 45299
||||| || || ||| || | | | |||| | ||||||||||| ||||
Sbjct 133 TGTCCTGGATCTTGGCCTTGACGTTATCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAA 74
Query 45300 TCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
| ||||| || || ||||||||||||||||| |||||
Sbjct 73 TGGTCTTTCCGGTGAGAGTCTTCACAAAGATCTGCAT 37
>seq475
Length=1570329
Score = 107 bits (118), Expect = 2e-18
Identities = 163/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||| |||| | | |||| |||||| || ||| ||||| |||||||||||
Sbjct 1256107 GCCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 1256048
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| ||| | || ||||| || || || || || || | || ||| ||||| || ||
Sbjct 1256047 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGG 1255988
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| |||||||| ||| || || ||| || | | | | |||| | ||||||
Sbjct 1255987 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCAC 1255928
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
||||| ||| || |||||||| ||||| |||||||| || |||||||| |||
Sbjct 1255927 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTTG 1255876
>seq21504
Length=484
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || |||||||| |||||||||||| || |||| | || ||
Sbjct 451 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCATCCTCA 392
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| || | ||||| ||||| || || | |||||||||||| |
Sbjct 391 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGA 332
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| || || | | | |||| | |||||| || | ||| || ||||||
Sbjct 331 ATTTTGGCTTTCACGTTATCAATGGTGTCAGAGCTCTCCACTTCGAGGGTGATAGTCTTG 272
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| || || ||||| || ||||||||||||
Sbjct 271 CCTGTAAGGGTCTTGACGAAGATTTGCATG 242
>seq10281
Length=966
Score = 98.7 bits (108), Expect = 8e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184
|| |||||||| ||||| ||||||||| ||||||||||| || || ||||
Sbjct 702 AAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCGGCCGTCT 643
Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
|| || || ||||| || || ||||| | ||| || || || || | || || |||||
Sbjct 642 TCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGGGATGCCTTCTTTGTCT 583
Query 45245 GCAATTTTTTGCTTAACCGCCGCC-ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303
||||| |||| || | | | | | || | ||||||||||| ||||||||
Sbjct 582 TGGATTTTG-GCTTTCACGTTGTCGATGGTATCAGAGCTCTCCACCTCCAAAGTAATCGT 524
Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| ||||||| || || ||||||||||||||
Sbjct 523 CTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491
Score = 95.1 bits (104), Expect = 1e-14
Identities = 153/218 (70%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC--AGTTGGCGATCGTCGT 45185
|||||||| |||||| ||| ||||| |||||||||||| | |||| || |||| |
Sbjct 243 ACCAAGTGGAGCGTGGACTCTTTCTGGATGTTGTAGTCGGCCAAAGTT--CGGCCGTCTT 186
Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245
| || ||||| |||||||| || | || ||| ||||| || || | || ||||| |||
Sbjct 185 CGAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTATCCT 126
Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305
|| || ||||| | | | |||| | |||||||| | ||| || ||||
Sbjct 125 GGATCTTGACTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATTGTCT 66
Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343
| || || |||||||| | ||| | ||||| ||| ||
Sbjct 65 TTCCGGTGAGAGTCTTAATGAAGGTCTGCATCTTGACT 28
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| ||||||||||| || || | || || || || |||||||| ||
Sbjct 454 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCGGCCATCCTCGAGCTGCTTTCCGGCAAA 395
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
||||||| || ||||| || || | ||||||||| || |||||| ||| ||
Sbjct 394 GATCAACCTTTGCTGGTCCGGTGGTATACCCTCCTTATCTTGAATTTTAGCCTTGACGTT 335
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| ||| |||| | ||| ||||| | ||| |||||||| ||||| || || || ||
Sbjct 334 GTCGACGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTGAC 275
Query 45325 AAAGATTTGCAT 45336
||||| |||||
Sbjct 274 GAAGATCTGCAT 263
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||| ||||| ||||||||||| || | |||| | || ||
Sbjct 927 ACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCA 868
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||| ||||| || | ||||| ||||| || || | ||| || |||||
Sbjct 867 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATACCTTCTTTGTCTTGG 808
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| ||| || | | | || || ||| ||||||| || || |||||
Sbjct 807 ATTTTAGCCTTGACGTTGTCGATAGTATCAGAACTCTCGACCTCCAGAGTGATGGTCTTC 748
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
||||| || ||||| || ||||| ||||||
Sbjct 747 CCCGTAAGGGTCTTGACGAAGATCTGCATG 718
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394769742547219
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |