Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq25626 129 5e-25 seq273 125 6e-24 seq61295 107 2e-18 seq475 107 2e-18 seq21504 104 2e-17 seq10281 98.7 8e-16 >seq25626 Length=405 Score = 129 bits (142), Expect = 5e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGT-TCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 |||||||||||||||||||||| | || || || |||| || || || || ||||||| Sbjct 321 CTCCTTCTGAATGTTGTAGTCGGCTAAGGTG-CGGCCGTCTTCAAGCTGCTTCCCGGCGA 263 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 | ||||| | ||| ||||| ||||| | ||||||||||||| ||| || ||| || Sbjct 262 AGATCAATCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTAGCCTTGACGT 203 Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | |||| | ||| ||||||| ||||| ||||| || || |||||||||| Sbjct 202 TATCAATGGTGTCTGAGCTCTCAACCTCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCA 143 Query 45324 CAAAGATTTGCAT 45336 ||||||| ||||| Sbjct 142 CAAAGATCTGCAT 130 >seq273 Length=4066651 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | |||| |||||| ||| ||| ||||| |||||||||||| | Sbjct 887189 CCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 887248 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| |||| ||||| ||||| || ||||||| ||| ||||| || || Sbjct 887249 AGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGG 887308 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||| ||||| || || ||| || | | | | |||| | ||||||| Sbjct 887309 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 887368 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| || |||| |||||||||||||| ||||| Sbjct 887369 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 887415 >seq61295 Length=203 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 45180 CGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCT 45239 |||| || || || || |||||||| ||||||| ||| ||||| ||||| | |||||||| Sbjct 193 CGTCTTCAAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCCT 134 Query 45240 TGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAA 45299 ||||| || || ||| || | | | |||| | ||||||||||| |||| Sbjct 133 TGTCCTGGATCTTGGCCTTGACGTTATCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAA 74 Query 45300 TCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | ||||| || || ||||||||||||||||| ||||| Sbjct 73 TGGTCTTTCCGGTGAGAGTCTTCACAAAGATCTGCAT 37 >seq475 Length=1570329 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| |||||| || ||| ||||| ||||||||||| Sbjct 1256107 GCCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 1256048 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || || || || || | || ||| ||||| || || Sbjct 1256047 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGG 1255988 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||| ||| || || ||| || | | | | |||| | |||||| Sbjct 1255987 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCAC 1255928 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||||| ||| || |||||||| ||||| |||||||| || |||||||| ||| Sbjct 1255927 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTTG 1255876 >seq21504 Length=484 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||| |||||||||||| || |||| | || || Sbjct 451 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGACCATCCTCA 392 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| ||||| || || | |||||||||||| | Sbjct 391 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGA 332 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | |||| | |||||| || | ||| || |||||| Sbjct 331 ATTTTGGCTTTCACGTTATCAATGGTGTCAGAGCTCTCCACTTCGAGGGTGATAGTCTTG 272 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| || |||||||||||| Sbjct 271 CCTGTAAGGGTCTTGACGAAGATTTGCATG 242 >seq10281 Length=966 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| ||||| ||||||||| ||||||||||| || || |||| Sbjct 702 AAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCGGCCGTCT 643 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || ||||| || || ||||| | ||| || || || || | || || ||||| Sbjct 642 TCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGGGATGCCTTCTTTGTCT 583 Query 45245 GCAATTTTTTGCTTAACCGCCGCC-ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 ||||| |||| || | | | | | || | ||||||||||| |||||||| Sbjct 582 TGGATTTTG-GCTTTCACGTTGTCGATGGTATCAGAGCTCTCCACCTCCAAAGTAATCGT 524 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| ||||||| || || |||||||||||||| Sbjct 523 CTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC--AGTTGGCGATCGTCGT 45185 |||||||| |||||| ||| ||||| |||||||||||| | |||| || |||| | Sbjct 243 ACCAAGTGGAGCGTGGACTCTTTCTGGATGTTGTAGTCGGCCAAAGTT--CGGCCGTCTT 186 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 | || ||||| |||||||| || | || ||| ||||| || || | || ||||| ||| Sbjct 185 CGAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTATCCT 126 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 || || ||||| | | | |||| | |||||||| | ||| || |||| Sbjct 125 GGATCTTGACTTTAACGTTGTCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATTGTCT 66 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 | || || |||||||| | ||| | ||||| ||| || Sbjct 65 TTCCGGTGAGAGTCTTAATGAAGGTCTGCATCTTGACT 28 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || || | || || || || |||||||| || Sbjct 454 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCGGCCATCCTCGAGCTGCTTTCCGGCAAA 395 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| || ||||| || || | ||||||||| || |||||| ||| || Sbjct 394 GATCAACCTTTGCTGGTCCGGTGGTATACCCTCCTTATCTTGAATTTTAGCCTTGACGTT 335 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | ||| |||| | ||| ||||| | ||| |||||||| ||||| || || || || Sbjct 334 GTCGACGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTGAC 275 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 274 GAAGATCTGCAT 263 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||| ||||| ||||||||||| || | |||| | || || Sbjct 927 ACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCCAATGTGCGACCATCCTCA 868 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| || | ||||| ||||| || || | ||| || ||||| Sbjct 867 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATACCTTCTTTGTCTTGG 808 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | || || ||| ||||||| || || ||||| Sbjct 807 ATTTTAGCCTTGACGTTGTCGATAGTATCAGAACTCTCGACCTCCAGAGTGATGGTCTTC 748 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| || ||||| || ||||| |||||| Sbjct 747 CCCGTAAGGGTCTTGACGAAGATCTGCATG 718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394769742547219