Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq475 95.1 9e-15 seq273 91.5 1e-13 seq19370 89.7 4e-13 seq683 89.7 4e-13 seq10281 84.2 2e-11 seq671 82.4 6e-11 >seq475 Length=1570329 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | | || | |||| Sbjct 1256091 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 1256032 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||||||| |||| || || || || || ||| | ||| |||||||| Sbjct 1256031 TCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 1255972 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| ||||| | |||||| || | ||||||| | Sbjct 1255971 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 1255912 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| |||| || || || |||||||||||||| Sbjct 1255911 TTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTT 1255877 >seq273 Length=4066651 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||||| || || | ||| Sbjct 887204 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCT 887263 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||| |||||||| ||| |||| | || || || || ||| | ||| || || || Sbjct 887264 TCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCT 887323 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | | ||||||| |||||| || | ||||||| | Sbjct 887324 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 887383 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || |||||||| || || ||||| || |||||| Sbjct 887384 TTACCGGTCAAGGTCTTCACAAAGATCTGCATT 887416 >seq19370 Length=533 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || || || || | ||| ||||| |||||||||||||| |||||||||||| Sbjct 212 CCTCCCCTAAGCCTCAGCACAAGGTGCAGTGTAGATTCTTTTTGAATATTGTAGTCGGCC 153 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | ||||| || || |||| | || || |||||| || Sbjct 152 AAGGTACGGCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGG 93 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || ||||| |||||| | | | ||||| | | |||| Sbjct 92 ATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACC 33 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTT 18310 || | |||||| | |||||||| | ||||| Sbjct 32 TCGAGAGTGATGGTCTTGCCGGTTAGGGTTTT 1 >seq683 Length=758919 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || ||||| || | ||| |||| ||| || || || ||||| || ||||| ||||| | Sbjct 117125 CCACCCCGCAGACAAAGCACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGAG 117184 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| |||| |||||||||||| | || || || || || || Sbjct 117185 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGG 117244 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| ||||| || |||| | || ||||| | | ||| |||||||| ||||| | Sbjct 117245 ATGCCCTCCTTGTCTTGGATTT-TGGCTTTGACATTTTCAATAGTGTCACTGGGCTTGAC 117303 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | ||||| |||| ||||| ||||| || ||||| Sbjct 117304 CTCGAGTGTGATGGTCTTGCCCGTCAGGGTTTTCACAAAGATCTGCAT 117351 >seq10281 Length=966 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| ||| || || || ||||| || ||||||||||||||| Sbjct 261 CCACCACGGAGCCTGAGGACCAAGTGGAGCGTGGACTCTTTCTGGATGTTGTAGTCGGCC 202 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||||| | |||||||| || ||||||| || || || ||| || Sbjct 201 AAAGTTCGGCCGTCTTCGAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGG 142 Query 18219 ACGCCTTCCTTATC 18232 | |||||||||||| Sbjct 141 ATGCCTTCCTTATC 128 >seq671 Length=818080 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 18105 CGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTT 18164 || ||||| | |||| ||||| || || || ||||||||||||||||| | || || Sbjct 168636 CGAAGTCTCAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 168577 Query 18165 TTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCT 18224 |||||||||| || ||||| ||| |||| |||||||| ||| | || | ||| Sbjct 168576 CATCAATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGAGCAGGAGGAATTCCT 168517 Query 18225 TCCTTATC 18232 |||||||| Sbjct 168516 TCCTTATC 168509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379050705326055