Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq683 91.5 1e-13 seq29432 86.0 5e-12 >seq683 Length=758919 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| |||||| | || ||||| || || || |||| ||| | | || Sbjct 117351 ATGCAGATCTTTGTGAAAACCCTGACGGGCAAGACCATCACACTCGAGGTCAAGCCCAGT 117292 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | | |||| ||| || | ||||| | || || ||| | || ||||||| Sbjct 117291 GACACTATTGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 117232 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || | | | || | |||||||||||| ||||| ||| | ||| | || || | | Sbjct 117231 CAGCATCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAAC 117172 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||||||| |||| || || || ||| | | |||| || ||| Sbjct 117171 ATCCAGAAAGAGTCCACTCTGCACTTGGTGCTTTGTCTGCGGGGTGGT 117124 >seq29432 Length=351 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || |||||| |||||||||| || || ||| |||| ||||| || Sbjct 338 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 279 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| |||| || || | |||||||| | || || ||| Sbjct 278 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGATCAG 219 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || || || || | || || ||||| || ||||| ||| || || |||| | Sbjct 218 CAGCGATTGATCTTCGCTGGAAAACAGCTCGAAGACGGGCGTACTTTGGCTGACTACAAC 159 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTT 25043 || |||||||| ||||||||||| | ||||| Sbjct 158 ATCCAGAAAGAATCCACGCTTCATCTTGTGTT 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417980582902880