Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq93 129 5e-25 seq21504 125 6e-24 seq19201 118 9e-22 seq782 118 9e-22 seq17663 114 1e-20 seq475 102 7e-17 seq58060 93.3 4e-14 seq273 87.8 2e-12 seq188 84.2 2e-11 seq94 84.2 2e-11 seq10281 82.4 7e-11 >seq93 Length=2374459 Score = 129 bits (142), Expect = 5e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 ||||||| |||||| || |||||||| ||||| || || |||||||| || || |||| Sbjct 51167 CCACCTCATCTTTGCTTGTATACTCTACTATTTCTGTGCACAGATTGCTGCATTTGATCG 51226 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | |||| || |||||||||||| || || || ||||| |||||||||||||| || | Sbjct 51227 TTCCCAGGTTCTGCTGGTTGCTTTTCCGGTTACAGGAATCTTTGTAGAGCATGTATGGGG 51286 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 | || ||||| ||||||||| ||||| || Sbjct 51287 TACCTGTCTCTGTCTGCGACTCAATGATGGC 51317 >seq21504 Length=484 Score = 125 bits (138), Expect = 6e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || |||||||| || |||||| |||| || || || Sbjct 242 CATGCAAATCTTCGTCAAGACCCTTACAGGCAAGACTATCACCCTCGAAGTGGAGAGCTC 301 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || ||| | ||| ||||||||| ||| | || || ||||| Sbjct 302 TGACACCATTGATAACGTGAAAGCCAAAATTCAGGACAAGGAGGGCATCCCACCGGACCA 361 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||| ||| | || || | ||| || ||| || || Sbjct 362 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACAA 421 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || || |||||||| ||||| |||| ||| Sbjct 422 CATCCAGAAGGAATCGACCCTTCACTTGGTCCTT 455 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || ||||||||| |||| || || ||| Sbjct 15 ATGCAGATCTTCGTCAAGACACTCACCGGAAAGACGATCACCCTCGAGGTGGAGAGCTCC 74 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| |||| |||| ||| || ||||||||||||| | || || ||||| Sbjct 75 GACACTATCGACAACGTGAAAACCAAGA-TACAGGACAAGGAAGGCATCCCACCGGACCA 133 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||| | |||| ||||| || || || | ||||| | | | ||| | || || | Sbjct 134 GCAAAGGTTAATCTTCGCCGGAAAGCAACTCGAAGA-TGGACGAACTCTTGCTGACTACA 192 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||| || ||||| || || ||||| |||| Sbjct 193 ACATCCAGAAAGAGTCAACACTTCACTTGGT 223 >seq19201 Length=536 Score = 118 bits (130), Expect = 9e-22 Identities = 180/254 (71%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 31166 AGGAGAATAAGGCGAATTGAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAA 31225 ||||||| | | ||| ||| |||| ||||| || || || || || || || || || Sbjct 529 AGGAGAAGAGAGAGAA--GAAGCAAA-ATGCAGATCTTTGTGAAAACCCTAACGGGGAAG 473 Query 31226 ACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCG 31285 ||||| ||| | || |||||| ||||||||| |||| | || || || || | Sbjct 472 ACGATAACCCTAGAGGTTGAATCGTCCGACACGATCGACAATGTGAAGGCGAAGATCCAG 413 Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 ||||||||||| | || || || |||||||| || |||||||| || || ||| ||||| Sbjct 412 GACAAGGAAGGAATCCCACCGGATCAGCAGCGGCTGATATTCGCGGGGAAGCAGCTGGAA 353 Query 31346 GACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| | ||| | ||||| ||||| || || || ||||| ||||| |||| || Sbjct 352 GACGGAAGGACACTCGCGGATTACAACATCCAGAAGGAGTCGACGCTTCACTTGGTTCTC 293 Query 31406 AGACTGAGGGGCGG 31419 | ||||| || || Sbjct 292 CGTCTGAGAGGAGG 279 >seq782 Length=486663 Score = 118 bits (130), Expect = 9e-22 Identities = 284/427 (67%), Gaps = 12/427 (3%) Strand=Plus/Minus Query 22154 TAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT 22213 |||||||| || ||||| | |||| |||||| |||| || || || || | ||| Sbjct 446721 TAATACATACCAGTCTTTAAACCCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTG 446662 Query 22214 CCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCT 22273 ||||| | | | || |||| || | ||||| || ||||| || || || ||| Sbjct 446661 CCATAGTTAGCAATGTGGATGTTCAGA------GACTGGCTTTGATCAATGAAAGCACCT 446608 Query 22274 CGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGT 22333 | || || ||||| || | | || | || ||||||||||| ||||| || ||| Sbjct 446607 CTCTCAGCTGCCATCTTGAGAATGGTTTTCTGAGAGATTTCCCATACAGTCTTATAAAGT 446548 Query 22334 TGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTG--TG-TATG 22390 ||| | | || || || | || ||||||| || || |||| || || Sbjct 446547 TGCTTCAAGTCATCAGGAATTTCTGATATGCTCTGGATAGAGCC---ATTGCATGCAATA 446491 Query 22391 ATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGA 22450 ||| |||||| ||| || |||||||| || | ||| |||||| | | ||| Sbjct 446490 ATCTGATTTTTCATCTCTTCATTCCACAAGCCCTGCTCAATCAGATCTTTCAGTAAGTGA 446431 Query 22451 CGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAAC 22510 | || || | ||||| || || |||||||| | ||| ||| |||||| || | Sbjct 446430 GGATTTACAATCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTACAT 446371 Query 22511 GGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCC 22570 ||||| | || ||||| |||||||| |||||||| || ||||| || |||||||| || Sbjct 446370 GGTTCAATGGACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCA 446311 Query 22571 AACAGTA 22577 | |||| Sbjct 446310 ATAAGTA 446304 >seq17663 Length=579 Score = 114 bits (126), Expect = 1e-20 Identities = 253/376 (67%), Gaps = 5/376 (1%) Strand=Plus/Minus Query 57759 GTGCAAGTGACGGAGGCGAGATGCTTT-TACGGATTTCAAGTGGCCATTGAAAACGTGCA 57817 || ||||| | ||||| | |||||| || || |||||| | ||||| || ||| | || Sbjct 578 GTCCAAGTTCCTGAGGCTCG-TGCTTTCTATGGGTTTCAAATTGCCATGGAGAACATTCA 520 Query 57818 TTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAG 57877 ||| || ||||| | ||| | || || | | ||||| | ||||| ||| Sbjct 519 TTCGGAGATGTACAGCCAACTTCTGGAGACATTTATAAAGGATTCGCAGGAGAAGGATAG 460 Query 57878 ACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAA 57937 ||||||||| || ||||| || || || || ||||||||||| | |||| | | Sbjct 459 ACTGTTCAATGCTATCGAGACCATTCCTTGCATTTCCAAGAAGGCAAAATGGTGTTTAGA 400 Query 57938 ATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGA 57997 ||||| |||| | | | | || || | |||||| | || || || |||||| Sbjct 399 TTGGATTCAAAGTCCTATG---TCTTTTGCTGTGAGGCTGGTTGCTTTTGCATGCGTCGA 343 Query 57998 AGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057 ||| || ||||| ||||| |||||| || || || ||| | ||||| | || || || Sbjct 342 AGGAATCTTCTTCTCGGGAAGCTTTTGTGCCATCTTCTGGCTTAAGAAGAGAGGTCTTAT 283 Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTT 58117 ||| || |||| || |||||| | ||||| | || ||||| || || ||| || Sbjct 282 GCCGGGTTTGACTTTCTCAAACGAGCTTATATCCAGAGATGAGGGGCTTCACTGTGACTT 223 Query 58118 TGCGTGCCTAATGTAC 58133 ||| || || ||||| Sbjct 222 TGCTTGTCTCTTGTAC 207 >seq475 Length=1570329 Score = 102 bits (112), Expect = 7e-17 Identities = 163/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| |||||||||||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 1255875 TCAAA-ATGCAAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAG 1255933 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || ||||| | || | || || | || ||| ||||| ||| | || || Sbjct 1255934 CCCAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCT 1255993 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| ||||||| ||| | || Sbjct 1255994 GACCAGCAGAGGCTCATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAC 1256053 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || ||||| ||||| || || ||||| || | |||||||| || Sbjct 1256054 TACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGG 1256106 >seq58060 Length=210 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||||||| | || || |||||||||||||| || |||||||| || ||| | || Sbjct 60 GGACAAGGAAGGCATCCCACCGGACCAGCAGCGTCTCATCTTCGCTGGGAAGCAGCTTGA 119 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| | ||| || || || |||||||| ||||| ||||| ||||| |||| || Sbjct 120 GGACGGTCGCACTTTGGCTGACTACAACATTCAGAAAGAGTCGACCCTTCACTTGGTTCT 179 Query 31405 TAGACT 31410 || || Sbjct 180 CAGGCT 185 >seq273 Length=4066651 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| || || || |||||| | || || || || Sbjct 887415 ATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 887356 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||| || ||| | || || |||||| Sbjct 887355 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCAG 887296 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || |||||||||||||||||| || || ||| || ||| Sbjct 887295 CAGAGGTTGATCTTTGCCGGCAAACAGTTGGAAGACGGACGCACCCTGTCCGACTACAAC 887236 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || ||||| || ||||| || ||||| || | ||||||| ||| Sbjct 887235 ATCCAGAAAGAGTCCACTCTGCACCTGGTCCTGCGCTTGAGGGGAGGT 887188 >seq188 Length=3215107 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || |||||||| || ||||| | || || | || Sbjct 2830744 ATGCAGATCTTTGTGAAGACCCTAACAGGCAAGACCATCACACTTGAGGTCAAGCCCAAT 2830803 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | |||||| | ||| ||||||| ||| | || || |||||| Sbjct 2830804 GACACTATTGAGAATGTCAAAGCTAAAATCCAAAACAAGGAGGGCATCCCACCTGACCAG 2830863 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||||||| |||| || ||| | || ||||| Sbjct 2830864 CAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAAT 2830923 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || ||||| || ||| ||| ||| |||| |||| Sbjct 2830924 ATCCAGAAAGAGTCCACTCTGCACTCGGTGCTTCATCTGCGGGGTGGTA 2830972 >seq94 Length=5588587 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||||||||| || ||||| |||| || || || Sbjct 3280253 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACACTCGAGGTCGAGCCCAGT 3280312 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | | | ||||||| ||| | || || |||||| Sbjct 3280313 GACACTACTGAGAATGTCAAAGCTAAAGTCCAACACAAGGAGGGCATCCCACCTGACCAG 3280372 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||||| || || || ||||||||| |||| || | || ||| | || || || Sbjct 3280373 CATCGTCTGATTTTTGCCGGCAAACAGATGGAGGA-TGGCTGCACTCTCTCAGACTAAAA 3280431 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | || ||||| || ||||| || |||| ||| ||| |||| |||| Sbjct 3280432 TGTCCAGAAAGAGTCCACTCTGCACTTGGTGCTTCTTCTGCGGGGTGGTA 3280481 >seq10281 Length=966 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || || ||||| | || || || || Sbjct 718 CATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACCATCACTCTGGAGGTCGAGAGTTC 777 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||| | ||||| | ||| ||||| ||||| | || || ||||| Sbjct 778 TGATACTATCGACAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCGGACCA 837 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || |||||||| || ||| | || || | || || || || || Sbjct 838 GCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACATTGGCTGACTACAA 897 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || ||||| ||||| || || |||| ||| | || | || |||| Sbjct 898 CATCCAGAAAGAGTCGACCCTCCACTTGGTTCTTCGTCTACGTGGTGGTA 947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445412912816880