Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq7730 178 3e-39 seq3 87.8 4e-12 >seq7730 Length=1237 Score = 178 bits (196), Expect = 3e-39 Identities = 392/574 (68%), Gaps = 19/574 (3%) Strand=Plus/Plus Query 35147 AAGGACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCT 35206 ||| ||||||| || || || || || |||| | || || ||| |||| |||| | Sbjct 250 AAGAACGATAGGACAGGGACTGGTACATTATCTAAATTCGGTTGCCAGATGACGTTCAAT 309 Query 35207 CTTCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTG 35266 | || | || | ||||| |||| || || |||| | | ||||||||||| ||||| Sbjct 310 TTGCGC-AGGAA--TTTTCCACTTCTGACGACAAAGAGAGTATTCTGGAGAGGTGTTGTT 366 Query 35267 GAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAG--AATTGGCCAAGAAGA 35324 || ||||| |||||||| || || || | || |||| | || |||||| | Sbjct 367 GAGGAACTTCTTTGGTTCATAAGCGGTTCAACCAATGC-AAAGTTACTT---CAAGAAAA 422 Query 35325 AGATA--CACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATA 35382 | || || || ||| | | |||| ||| | | | | || ||| || | Sbjct 423 GGGTATCCATATATGGGATGGGAATGCGTCAAGAACTTATCTTGATGGTATTGGACTGAC 482 Query 35383 CGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGC 35442 || |||| ||| || || | |||||||| || ||||| |||||| | || |||||||| Sbjct 483 TGAGAGAGAAGAAGGTGACCTTGGACCCGTTTATGGATTTCAATGGAGACACTTTGGTGC 542 Query 35443 TGAATATGATACCTGTTCTTCC-GATTATACTGGAAAGGGTATTGATCAATTGGCCAATA 35501 | | || | | | | | | | ||||||||||| | || ||||||| | | || Sbjct 543 TAAGTAC-ACAGATATGCATGCTGATTATACTGGCCAAGGATTTGATCAGCTCTCGGATG 601 Query 35502 TACTAAAGACCCTGAGAGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAAT 35560 || | || | | | |||| ||||| |||||| || |||| || ||| |||| |||||| Sbjct 602 TAATTAACAAGATCA-AGAACAATCCTGATGATCGACGGATAATAATGTCGGCTTGGAAT 660 Query 35561 CCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTG 35620 ||| || ||| | | ||||| |||||||||||||||||| ||| || |||||||| Sbjct 661 CCTTCTGACCTTAAGTTGATGGCACTTCCTCCATGCCACATGTTTGCGCAGTTTTATGTT 720 Query 35621 GCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCG 35678 | |||||||| | ||||| || |||||||||| ||| || ||| || | || | Sbjct 721 ACAAATGGAGAGCTTTCGTGTCAAATGTATCAGCGCTCAGCCGATATG--GGTCTTGGTG 778 Query 35679 TGCCCTTCAATATTGCATCATACTCTCTTCTGAC 35712 | || || || ||||| |||||||| ||||| || Sbjct 779 TACCGTTTAACATTGCCTCATACTCCCTTCTTAC 812 >seq3 Length=9954913 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| || ||||| ||||| ||||||||||||||| |||| | || ||||| || |||| Sbjct 27105 TTGTAGCTTTTGCCGCAGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCT 27164 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || ||||||| | || | ||||||| ||||| | |||||||| Sbjct 27165 GGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGA 27210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988779654064245