Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq7730 178 3e-39
seq3 87.8 4e-12
>seq7730
Length=1237
Score = 178 bits (196), Expect = 3e-39
Identities = 392/574 (68%), Gaps = 19/574 (3%)
Strand=Plus/Plus
Query 35147 AAGGACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCT 35206
||| ||||||| || || || || || |||| | || || ||| |||| |||| |
Sbjct 250 AAGAACGATAGGACAGGGACTGGTACATTATCTAAATTCGGTTGCCAGATGACGTTCAAT 309
Query 35207 CTTCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTG 35266
| || | || | ||||| |||| || || |||| | | ||||||||||| |||||
Sbjct 310 TTGCGC-AGGAA--TTTTCCACTTCTGACGACAAAGAGAGTATTCTGGAGAGGTGTTGTT 366
Query 35267 GAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAG--AATTGGCCAAGAAGA 35324
|| ||||| |||||||| || || || | || |||| | || |||||| |
Sbjct 367 GAGGAACTTCTTTGGTTCATAAGCGGTTCAACCAATGC-AAAGTTACTT---CAAGAAAA 422
Query 35325 AGATA--CACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATA 35382
| || || || ||| | | |||| ||| | | | | || ||| || |
Sbjct 423 GGGTATCCATATATGGGATGGGAATGCGTCAAGAACTTATCTTGATGGTATTGGACTGAC 482
Query 35383 CGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGC 35442
|| |||| ||| || || | |||||||| || ||||| |||||| | || ||||||||
Sbjct 483 TGAGAGAGAAGAAGGTGACCTTGGACCCGTTTATGGATTTCAATGGAGACACTTTGGTGC 542
Query 35443 TGAATATGATACCTGTTCTTCC-GATTATACTGGAAAGGGTATTGATCAATTGGCCAATA 35501
| | || | | | | | | | ||||||||||| | || ||||||| | | ||
Sbjct 543 TAAGTAC-ACAGATATGCATGCTGATTATACTGGCCAAGGATTTGATCAGCTCTCGGATG 601
Query 35502 TACTAAAGACCCTGAGAGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAAT 35560
|| | || | | | |||| ||||| |||||| || |||| || ||| |||| ||||||
Sbjct 602 TAATTAACAAGATCA-AGAACAATCCTGATGATCGACGGATAATAATGTCGGCTTGGAAT 660
Query 35561 CCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTG 35620
||| || ||| | | ||||| |||||||||||||||||| ||| || ||||||||
Sbjct 661 CCTTCTGACCTTAAGTTGATGGCACTTCCTCCATGCCACATGTTTGCGCAGTTTTATGTT 720
Query 35621 GCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCG 35678
| |||||||| | ||||| || |||||||||| ||| || ||| || | || |
Sbjct 721 ACAAATGGAGAGCTTTCGTGTCAAATGTATCAGCGCTCAGCCGATATG--GGTCTTGGTG 778
Query 35679 TGCCCTTCAATATTGCATCATACTCTCTTCTGAC 35712
| || || || ||||| |||||||| ||||| ||
Sbjct 779 TACCGTTTAACATTGCCTCATACTCCCTTCTTAC 812
>seq3
Length=9954913
Score = 87.8 bits (96), Expect = 4e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975
|||| || ||||| ||||| ||||||||||||||| |||| | || ||||| || ||||
Sbjct 27105 TTGTAGCTTTTGCCGCAGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCT 27164
Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021
|| ||||||| | || | ||||||| ||||| | ||||||||
Sbjct 27165 GGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGA 27210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 988779654064245
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |