Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq782 201 1e-46
seq3 120 3e-22
seq514 114 1e-20
seq93 105 6e-18
>seq782
Length=486663
Score = 201 bits (222), Expect = 1e-46
Identities = 334/476 (70%), Gaps = 15/476 (3%)
Strand=Plus/Minus
Query 36796 GTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGC 36855
||||| | || ||||| | || | | ||| || | |||||||| ||||| ||||
Sbjct 446760 GTGAACTGGATTGGATTAGCCGCTGGTGCTGTCCTTAAGTAATACATACCAGTCTTTAAA 446701
Query 36856 CCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATA 36915
||| |||| ||||| || |||||||| || ||||| | || ||| | | | ||
Sbjct 446700 CCCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGCAATGTGGATG 446641
Query 36916 TATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAA 36975
| ||| || || |||||||| || || |||||||| || |||||||| | | |
Sbjct 446640 T------TCAGAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGA 446587
Query 36976 ATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAA 37035
|| ||| ||||| || ||||| || || ||||| | ||| || | | ||| || |
Sbjct 446586 ATGGTTTTCTGAGAGATTTCCCATACAGTCTTATAAAGTTGCTTCAAGTCATCAGGAATT 446527
Query 37036 TCTAA-ATGTT--GAATAGAACCATT--ATGTAACACAATTGTATTCTTTATGTCATTAT 37090
||| | ||| | | ||||| ||||| ||| || | || ||| || || || | ||
Sbjct 446526 TCTGATATGCTCTGGATAGAGCCATTGCATGCAATA--ATCTGATTTTTCATCTCTTCAT 446469
Query 37091 TCCACATATTTCTACTTATT-AGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCT 37149
|||||| | || || | | || ||| ||| || ||| |||||||||| |||||| |||
Sbjct 446468 TCCACA-AGCCCTGCTCAATCAGATCTTTCAGTAAGTGAGGATTTACAATCTGAAATTCT 446410
Query 37150 CCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTA 37209
|| || || ||||| | || || || ||||| ||| ||||||||||||||||||||||
Sbjct 446409 CCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTACATGGTTCAATGGACTCATTATTT 446350
Query 37210 CTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265
| | || |||| || || ||||||||||| || || || || | ||||||||
Sbjct 446349 CCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTATTTCT 446294
>seq3
Length=9954913
Score = 120 bits (132), Expect = 3e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| ||||| || || |||||||| |||||||| | || ||||||| ||||||||| ||
Sbjct 27228 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 27169
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||| | ||||| |||||||||||||| ||||| || || || ||||| |||
Sbjct 27168 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAGCT 27109
Query 11774 ACTACTCTTTCTCC 11787
|| || | ||||||
Sbjct 27108 ACAACACGTTCTCC 27095
>seq514
Length=1022489
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| |
Sbjct 284461 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 284520
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| |
Sbjct 284521 TTAACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 284580
Query 11772 CTACTACTCTTTCTCC 11787
| || || ||||| ||
Sbjct 284581 CCACCACCCTTTCCCC 284596
Score = 86.0 bits (94), Expect = 6e-12
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949
|||||| | ||||||||||||| ||||| ||||| ||||| || | ||| || |||
Sbjct 289501 ATCTCTGATGTATGTATCTATTAGCAAACTGTACATCTCTGAGTGGACATTCTCGATAAG 289560
Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATC 11994
|||||||| ||||||||||| || ||||||| | ||| || ||
Sbjct 289561 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTC 289605
>seq93
Length=2374459
Score = 105 bits (116), Expect = 6e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | || || || ||||| |||||||||||||||
Sbjct 38940 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 38999
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | || |||| || || ||||||||||| || || || || |
Sbjct 39000 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 39059
Query 37258 CTATTTCTCAATCCAT 37273
|||||||| | ||||
Sbjct 39060 CTATTTCTTATACCAT 39075
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468153265690160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |