Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq782 201 1e-46 seq3 120 3e-22 seq514 114 1e-20 seq93 105 6e-18 >seq782 Length=486663 Score = 201 bits (222), Expect = 1e-46 Identities = 334/476 (70%), Gaps = 15/476 (3%) Strand=Plus/Minus Query 36796 GTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGC 36855 ||||| | || ||||| | || | | ||| || | |||||||| ||||| |||| Sbjct 446760 GTGAACTGGATTGGATTAGCCGCTGGTGCTGTCCTTAAGTAATACATACCAGTCTTTAAA 446701 Query 36856 CCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATA 36915 ||| |||| ||||| || |||||||| || ||||| | || ||| | | | || Sbjct 446700 CCCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGCAATGTGGATG 446641 Query 36916 TATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAA 36975 | ||| || || |||||||| || || |||||||| || |||||||| | | | Sbjct 446640 T------TCAGAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGA 446587 Query 36976 ATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAA 37035 || ||| ||||| || ||||| || || ||||| | ||| || | | ||| || | Sbjct 446586 ATGGTTTTCTGAGAGATTTCCCATACAGTCTTATAAAGTTGCTTCAAGTCATCAGGAATT 446527 Query 37036 TCTAA-ATGTT--GAATAGAACCATT--ATGTAACACAATTGTATTCTTTATGTCATTAT 37090 ||| | ||| | | ||||| ||||| ||| || | || ||| || || || | || Sbjct 446526 TCTGATATGCTCTGGATAGAGCCATTGCATGCAATA--ATCTGATTTTTCATCTCTTCAT 446469 Query 37091 TCCACATATTTCTACTTATT-AGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCT 37149 |||||| | || || | | || ||| ||| || ||| |||||||||| |||||| ||| Sbjct 446468 TCCACA-AGCCCTGCTCAATCAGATCTTTCAGTAAGTGAGGATTTACAATCTGAAATTCT 446410 Query 37150 CCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTA 37209 || || || ||||| | || || || ||||| ||| |||||||||||||||||||||| Sbjct 446409 CCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTACATGGTTCAATGGACTCATTATTT 446350 Query 37210 CTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265 | | || |||| || || ||||||||||| || || || || | |||||||| Sbjct 446349 CCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTATTTCT 446294 >seq3 Length=9954913 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| |||||||| | || ||||||| ||||||||| || Sbjct 27228 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 27169 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| || || || ||||| ||| Sbjct 27168 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAGCT 27109 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 27108 ACAACACGTTCTCC 27095 >seq514 Length=1022489 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| | Sbjct 284461 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 284520 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 284521 TTAACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 284580 Query 11772 CTACTACTCTTTCTCC 11787 | || || ||||| || Sbjct 284581 CCACCACCCTTTCCCC 284596 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | ||||||||||||| ||||| ||||| ||||| || | ||| || ||| Sbjct 289501 ATCTCTGATGTATGTATCTATTAGCAAACTGTACATCTCTGAGTGGACATTCTCGATAAG 289560 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATC 11994 |||||||| ||||||||||| || ||||||| | ||| || || Sbjct 289561 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTC 289605 >seq93 Length=2374459 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || || ||||| ||||||||||||||| Sbjct 38940 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 38999 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || ||||||||||| || || || || | Sbjct 39000 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 39059 Query 37258 CTATTTCTCAATCCAT 37273 |||||||| | |||| Sbjct 39060 CTATTTCTTATACCAT 39075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468153265690160