Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq782 230 3e-55 seq91 179 5e-40 seq93 134 2e-26 seq3 120 4e-22 seq17663 107 3e-18 seq514 102 1e-16 >seq782 Length=486663 Score = 230 bits (254), Expect = 3e-55 Identities = 316/440 (72%), Gaps = 9/440 (2%) Strand=Plus/Minus Query 64878 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 64937 || ||||| || || |||| ||| | |||| ||||| || |||||||| || |||||| Sbjct 446721 TAATACATACCAGTCTTTAAACCCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTG 446662 Query 64938 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 64997 ||| | | | || ||||| |||| ||| || |||||||| ||||| || || Sbjct 446661 CCATAGTTAGCA------ATGTGGATGTTCAGAGACTGGCTTTGATCAATGAAAGCACCT 446608 Query 64998 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT 65057 || || || ||||| || | || || || || | |||||||| | ||| ||||||| | Sbjct 446607 CTCTCAGCTGCCATCTTGAGAATGGTTTTCTGAGAGATTTCCCATACAGTCTTATAAAGT 446548 Query 65058 CGCTTAATATCTTCTGGAAGGTTTG-TAT--TCTGAATGGATCCACCATCTGCCATAATC 65114 |||| | || || |||| | || ||| |||| || || ||| ||| |||||| Sbjct 446547 TGCTTCAAGTCATCAGGAATTTCTGATATGCTCTGGATAGAGCCATTGCATGCAATAATC 446488 Query 65115 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 65174 ||| || ||||| |||||||| || ||| | | | || | || | || ||| Sbjct 446487 TGATTTTTCATCTCTTCATTCCACAAGCCCTGCTCAATCAGATCTTTCAGTAAGTGAGGA 446428 Query 65175 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 65234 || || | ||||||||||| ||||| ||||| |||||||| || || |||||| | ||| Sbjct 446427 TTTACAATCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTACATGGT 446368 Query 65235 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 65294 || | |||||||||||||||| || ||||||||||| ||||| ||||| || || | Sbjct 446367 TCAATGGACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATA 446308 Query 65295 AATAAACTATTTCTAAGACC 65314 | |||||||||||| | ||| Sbjct 446307 AGTAAACTATTTCTTATACC 446288 >seq91 Length=5133788 Score = 179 bits (198), Expect = 5e-40 Identities = 161/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || ||| | | | ||||||||| | | ||||| || | ||| |||||||||||||||| | Sbjct 4309472 TTTTTACTTGCTGCTTCCAAAAACCGCAACAGGTGAAGGAATAGATTGATGATATCCAGG 4309531 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| || || | |||||| ||||| |||||||| |||||| |||| || |||||||| Sbjct 4309532 TAGAGGTTAATGGCGGCTAATACATACTCTTCAGGTGAGAGCCTATGCATCAGTGAGTGT 4309591 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 |||||||||||||||||||| ||||| | |||||| || | ||||| || ||||| ||| Sbjct 4309592 GTGTCATAGATAATGAATCCACAGAAAAGAAGGGCTCCTACAGCAGCCACGACCAATTCC 4309651 Query 9411 ACTGTTTCACTTTGCACAAATA 9432 | ||| ||||| | | ||||| Sbjct 4309652 ATTGTCTCACTGTAAAAAAATA 4309673 Score = 134 bits (148), Expect = 2e-26 Identities = 101/119 (85%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| |||||||| |||||| |||||| | |||| Sbjct 4313694 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGCGTATATACAGTCAAACCAAGG 4313753 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||||||||| | |||||||||| || | || ||||||||||||||||| Sbjct 4313754 AATACTGCAGTAGTCAGTACAAAAGCTTGCAGAATAATATATACATCATAGAAAGTAAC 4313812 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 9738 CTCCCTTGTATAATTTTCCGCATGCAGTCAAAGTATAAAAATACTGCAGTTGTTGCCGTT 9797 || || |||| || | |||| || | ||||||||||||| | ||||||||| || Sbjct 4319939 CTTCCATGTACAAATGTCCGTATAGACTCAAAGTATAAAACAAATGCAGTTGTCATTGTA 4319998 Query 9798 GTTAAAAGAAATTGTAGACAAAGGATACCGTAGACTTTTCTTAGAAATGC 9847 ||||| |||| ||| ||| ||||||| | |||||||||||||||||| || Sbjct 4319999 GTTAAGAGAACTTGCAGAGAAAGGATGCTGTAGACTTTTCTTAGAAAGGC 4320048 Score = 86.0 bits (94), Expect = 8e-12 Identities = 94/122 (77%), Gaps = 6/122 (5%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| ||||||| |||||||| ||||| |||||||||| |||||||||||||||| Sbjct 4322028 CCATTCGGATGTGCAAGCTGGCAGAGGCCACGCAGCTGCCATAATTGAAGTCGTCCTCGA 4322087 Query 9907 TGGAGGAGCACGCGTA--GAGGCTCGGCAT-GGCCATGGCGGCGCAGACCGAAACGCCGT 9963 | || |||| | || | || || | | ||||||| |||| |||||||| ||| Sbjct 4322088 TCGAAGAGCGGGGATAGCGGGGGTCAGAGTCGGCCATGTCGGC---AACCGAAACCCCGG 4322144 Query 9964 TT 9965 || Sbjct 4322145 TT 4322146 >seq93 Length=2374459 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 38940 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 38999 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 39000 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 39059 Query 65301 CTATTTCTAAGACCGTA 65317 |||||||| | ||| || Sbjct 39060 CTATTTCTTATACCATA 39076 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || ||||| || || | || Sbjct 63821 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATTCTTGCTGCCAAAA 63880 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 |||| || || || || | ||||| || |||||| |||| || |||| ||| || | Sbjct 63881 TGGCGTAGTCAGGGTGCTTAGTAGTCAGGGTTGCTGCTGTTTCAGCAGCCAAAGTATCTA 63940 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 63941 GTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 63986 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480 || || || ||||| || | || || || || ||||| || || || || || || ||| Sbjct 47799 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 47858 Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540 ||||||||||| ||||| | |||||| | || || || | || ||||| ||||| Sbjct 47859 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 47918 Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600 | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 47919 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACTCCAATTCCAATGGGGCGATGGCGT 47978 Query 65601 TTATTAGA 65608 ||||| || Sbjct 47979 TTATTTGA 47986 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | || | || |||| | Sbjct 52511 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 52570 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || || || |||||||| ||||| || | ||| || ||| | | || || ||||||| Sbjct 52571 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 52630 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||||||| || || Sbjct 52631 AGGCTCCAAGTAAATAGC 52648 >seq3 Length=9954913 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 27230 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 27171 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||||||||| |||||||||||||| ||||| | Sbjct 27170 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAG 27111 Query 36300 C 36300 | Sbjct 27110 C 27110 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || |||||||| | ||||||||||| || ||||| |||||||| ||||| Sbjct 25329 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATGGC 25270 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | || || |||||||| |||||| Sbjct 25269 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCT 25224 >seq17663 Length=579 Score = 107 bits (118), Expect = 3e-18 Identities = 239/354 (68%), Gaps = 6/354 (2%) Strand=Plus/Plus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| || || || ||||| || ||||| ||||| || | ||||| || || || | Sbjct 216 ACAAGCAAAGTCACAGTGAAGCCCCTCATCTCTGGATATAAGCTCGTTTGAGAAAGTCAA 275 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGA 36275 || ||||| || || | ||| |||||||| || |||| | |||| | | || || |||| Sbjct 276 ACCCGGCATAAGACCTCTCTTCTTAAGCCAGAAGATGG-CACAAAAGCTTCCCGAGAAGA 334 Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT- 36334 | |||||||| || ||||| |||| || ||| | || || | || | | | Sbjct 335 AGATTCCTTCGACGCATGCAAAAGCAACCAGCCTCACAGCAAAA--GACATAGGACTTTG 392 Query 36335 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| | | | ||| | |||||||| | ||||| || ||||| |||||||| Sbjct 393 AATCCAATCTAAACACCATTTTGCCTTCTTGGAAATGCAAGGAATGGTCTCGATAGCATT 452 Query 36394 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 36453 || || | || || | ||| || | | |||| || | | | || ||||| Sbjct 453 GAACAGTCTATCCTTCTCCTGCGAATCCTTTATAAATGTCTCCAGAAGTTGGCTGTACAT 512 Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 36507 |||||||||||||| || ||||| |||||||| || |||||| | |||||| Sbjct 513 CTCCGAATGAATGTTCTCCATGGCAATTTGAAACCCATAGAAAGCACGAGCCTC 566 >seq514 Length=1022489 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 284463 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 284522 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 | ||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 284523 AACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 284581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657650877196760