Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq782 230 3e-55
seq91 179 5e-40
seq93 134 2e-26
seq3 120 4e-22
seq17663 107 3e-18
seq514 102 1e-16
>seq782
Length=486663
Score = 230 bits (254), Expect = 3e-55
Identities = 316/440 (72%), Gaps = 9/440 (2%)
Strand=Plus/Minus
Query 64878 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 64937
|| ||||| || || |||| ||| | |||| ||||| || |||||||| || ||||||
Sbjct 446721 TAATACATACCAGTCTTTAAACCCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTG 446662
Query 64938 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 64997
||| | | | || ||||| |||| ||| || |||||||| ||||| || ||
Sbjct 446661 CCATAGTTAGCA------ATGTGGATGTTCAGAGACTGGCTTTGATCAATGAAAGCACCT 446608
Query 64998 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT 65057
|| || || ||||| || | || || || || | |||||||| | ||| ||||||| |
Sbjct 446607 CTCTCAGCTGCCATCTTGAGAATGGTTTTCTGAGAGATTTCCCATACAGTCTTATAAAGT 446548
Query 65058 CGCTTAATATCTTCTGGAAGGTTTG-TAT--TCTGAATGGATCCACCATCTGCCATAATC 65114
|||| | || || |||| | || ||| |||| || || ||| ||| ||||||
Sbjct 446547 TGCTTCAAGTCATCAGGAATTTCTGATATGCTCTGGATAGAGCCATTGCATGCAATAATC 446488
Query 65115 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 65174
||| || ||||| |||||||| || ||| | | | || | || | || |||
Sbjct 446487 TGATTTTTCATCTCTTCATTCCACAAGCCCTGCTCAATCAGATCTTTCAGTAAGTGAGGA 446428
Query 65175 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 65234
|| || | ||||||||||| ||||| ||||| |||||||| || || |||||| | |||
Sbjct 446427 TTTACAATCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTACATGGT 446368
Query 65235 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 65294
|| | |||||||||||||||| || ||||||||||| ||||| ||||| || || |
Sbjct 446367 TCAATGGACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATA 446308
Query 65295 AATAAACTATTTCTAAGACC 65314
| |||||||||||| | |||
Sbjct 446307 AGTAAACTATTTCTTATACC 446288
>seq91
Length=5133788
Score = 179 bits (198), Expect = 5e-40
Identities = 161/202 (80%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290
|| ||| | | | ||||||||| | | ||||| || | ||| |||||||||||||||| |
Sbjct 4309472 TTTTTACTTGCTGCTTCCAAAAACCGCAACAGGTGAAGGAATAGATTGATGATATCCAGG 4309531
Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350
|||| || || | |||||| ||||| |||||||| |||||| |||| || ||||||||
Sbjct 4309532 TAGAGGTTAATGGCGGCTAATACATACTCTTCAGGTGAGAGCCTATGCATCAGTGAGTGT 4309591
Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410
|||||||||||||||||||| ||||| | |||||| || | ||||| || ||||| |||
Sbjct 4309592 GTGTCATAGATAATGAATCCACAGAAAAGAAGGGCTCCTACAGCAGCCACGACCAATTCC 4309651
Query 9411 ACTGTTTCACTTTGCACAAATA 9432
| ||| ||||| | | |||||
Sbjct 4309652 ATTGTCTCACTGTAAAAAAATA 4309673
Score = 134 bits (148), Expect = 2e-26
Identities = 101/119 (85%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|||||||||| ||| |||||||||||||| |||||||| |||||| |||||| | ||||
Sbjct 4313694 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGCGTATATACAGTCAAACCAAGG 4313753
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598
|| |||||||||||||| | |||||||||| || | || |||||||||||||||||
Sbjct 4313754 AATACTGCAGTAGTCAGTACAAAAGCTTGCAGAATAATATATACATCATAGAAAGTAAC 4313812
Score = 91.5 bits (100), Expect = 2e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 9738 CTCCCTTGTATAATTTTCCGCATGCAGTCAAAGTATAAAAATACTGCAGTTGTTGCCGTT 9797
|| || |||| || | |||| || | ||||||||||||| | ||||||||| ||
Sbjct 4319939 CTTCCATGTACAAATGTCCGTATAGACTCAAAGTATAAAACAAATGCAGTTGTCATTGTA 4319998
Query 9798 GTTAAAAGAAATTGTAGACAAAGGATACCGTAGACTTTTCTTAGAAATGC 9847
||||| |||| ||| ||| ||||||| | |||||||||||||||||| ||
Sbjct 4319999 GTTAAGAGAACTTGCAGAGAAAGGATGCTGTAGACTTTTCTTAGAAAGGC 4320048
Score = 86.0 bits (94), Expect = 8e-12
Identities = 94/122 (77%), Gaps = 6/122 (5%)
Strand=Plus/Plus
Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906
||||||| ||||||| |||||||| ||||| |||||||||| ||||||||||||||||
Sbjct 4322028 CCATTCGGATGTGCAAGCTGGCAGAGGCCACGCAGCTGCCATAATTGAAGTCGTCCTCGA 4322087
Query 9907 TGGAGGAGCACGCGTA--GAGGCTCGGCAT-GGCCATGGCGGCGCAGACCGAAACGCCGT 9963
| || |||| | || | || || | | ||||||| |||| |||||||| |||
Sbjct 4322088 TCGAAGAGCGGGGATAGCGGGGGTCAGAGTCGGCCATGTCGGC---AACCGAAACCCCGG 4322144
Query 9964 TT 9965
||
Sbjct 4322145 TT 4322146
>seq93
Length=2374459
Score = 134 bits (148), Expect = 2e-26
Identities = 112/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
|| ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| |
Sbjct 38940 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 38999
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300
|||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 39000 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 39059
Query 65301 CTATTTCTAAGACCGTA 65317
|||||||| | ||| ||
Sbjct 39060 CTATTTCTTATACCATA 39076
Score = 96.9 bits (106), Expect = 5e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
|||| || | ||| |||||||||||||| | || || || || ||||| || || | ||
Sbjct 63821 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATTCTTGCTGCCAAAA 63880
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
|||| || || || || | ||||| || |||||| |||| || |||| ||| || |
Sbjct 63881 TGGCGTAGTCAGGGTGCTTAGTAGTCAGGGTTGCTGCTGTTTCAGCAGCCAAAGTATCTA 63940
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
||| || || || || ||| | |||| |||||||| || |||||
Sbjct 63941 GTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 63986
Score = 91.5 bits (100), Expect = 2e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480
|| || || ||||| || | || || || || ||||| || || || || || || |||
Sbjct 47799 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 47858
Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540
||||||||||| ||||| | |||||| | || || || | || ||||| |||||
Sbjct 47859 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 47918
Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600
| | |||||||| || ||||| | ||||| || ||||| || || || | ||| |
Sbjct 47919 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACTCCAATTCCAATGGGGCGATGGCGT 47978
Query 65601 TTATTAGA 65608
||||| ||
Sbjct 47979 TTATTTGA 47986
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115
|| |||||||||||| |||||||| ||||||||||| || | || | || |||| |
Sbjct 52511 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 52570
Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175
|| || || |||||||| ||||| || | ||| || ||| | | || || |||||||
Sbjct 52571 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 52630
Query 66176 CGGTTCCAAGTATATGGC 66193
|| |||||||| || ||
Sbjct 52631 AGGCTCCAAGTAAATAGC 52648
>seq3
Length=9954913
Score = 120 bits (132), Expect = 4e-22
Identities = 99/121 (82%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || |
Sbjct 27230 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 27171
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| ||||| || ||||| || ||||||||||| |||||||||||||| ||||| |
Sbjct 27170 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAG 27111
Query 36300 C 36300
|
Sbjct 27110 C 27110
Score = 102 bits (112), Expect = 1e-16
Identities = 86/106 (81%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477
|||||||| || |||||||| | ||||||||||| || ||||| |||||||| |||||
Sbjct 25329 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATGGC 25270
Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523
||||| || || |||||||| | || || |||||||| ||||||
Sbjct 25269 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCT 25224
>seq17663
Length=579
Score = 107 bits (118), Expect = 3e-18
Identities = 239/354 (68%), Gaps = 6/354 (2%)
Strand=Plus/Plus
Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216
||| || || || ||||| || ||||| ||||| || | ||||| || || || |
Sbjct 216 ACAAGCAAAGTCACAGTGAAGCCCCTCATCTCTGGATATAAGCTCGTTTGAGAAAGTCAA 275
Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGA 36275
|| ||||| || || | ||| |||||||| || |||| | |||| | | || || ||||
Sbjct 276 ACCCGGCATAAGACCTCTCTTCTTAAGCCAGAAGATGG-CACAAAAGCTTCCCGAGAAGA 334
Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT- 36334
| |||||||| || ||||| |||| || ||| | || || | || | | |
Sbjct 335 AGATTCCTTCGACGCATGCAAAAGCAACCAGCCTCACAGCAAAA--GACATAGGACTTTG 392
Query 36335 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393
||||| | | | ||| | |||||||| | ||||| || ||||| ||||||||
Sbjct 393 AATCCAATCTAAACACCATTTTGCCTTCTTGGAAATGCAAGGAATGGTCTCGATAGCATT 452
Query 36394 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 36453
|| || | || || | ||| || | | |||| || | | | || |||||
Sbjct 453 GAACAGTCTATCCTTCTCCTGCGAATCCTTTATAAATGTCTCCAGAAGTTGGCTGTACAT 512
Query 36454 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 36507
|||||||||||||| || ||||| |||||||| || |||||| | ||||||
Sbjct 513 CTCCGAATGAATGTTCTCCATGGCAATTTGAAACCCATAGAAAGCACGAGCCTC 566
>seq514
Length=1022489
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241
|| ||||| || || | ||| |||||||| |||||||| ||||| || || | || ||
Sbjct 284463 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 284522
Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300
| ||| ||||| | ||||| ||||| || ||||||||||||||||| || ||||||||
Sbjct 284523 AACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 284581
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657650877196760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |