Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq10281 129 6e-25
seq29432 114 1e-20
seq48301 105 7e-18
seq273 100 3e-16
seq671 91.5 1e-13
seq475 87.8 2e-12
seq19370 84.2 2e-11
>seq10281
Length=966
Score = 129 bits (142), Expect = 6e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | |||||| || ||||||| ||||||||| || || ||||| || ||
Sbjct 718 GCCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGC 659
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
|| || | |||||||||||| || || ||| |||||| | |||||||| || ||
Sbjct 658 CAAAGTCCGGCCGTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGG 599
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|||||||||||||| |||||| ||| | | || | || || | | ||||||
Sbjct 598 GATGCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCGATGGTATCAGAGCTCTCCAC 539
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||| | || | |||||| || ||||| ||||| || || |||||||||
Sbjct 538 CTCCAAAGTAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCATA 490
Score = 82.4 bits (90), Expect = 8e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || |||| ||| | ||| ||||| | || |||||||| || ||||| || || |
Sbjct 945 CCACCACGTAGACGAAGAACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCC 886
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||||| || || ||||| || ||||| |||| ||||| ||||| || || ||
Sbjct 885 AATGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 826
Query 139658 ATGCCTTCTTTGTCGGTGATTTT 139680
|| ||||||||||| ||||||
Sbjct 825 ATACCTTCTTTGTCTTGGATTTT 803
>seq29432
Length=351
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| ||| || ||||| || ||||| || || || || | | |||||||||||||
Sbjct 136 TGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCCAAAGTACGCCCGTCTTCGAGCTGT 195
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| ||||| |||||| || |||||||| ||||| || ||||||||||| ||| ||
Sbjct 196 TTTCCAGCGAAGATCAATCGCTGCTGATCCGGAGGGATTCCTTCTTTGTCTTGGATCTTG 255
Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741
|| | | || | ||||| | || ||| ||||| | ||| | |||||||||||
Sbjct 256 GCCTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTT 315
Query 139742 AACGTTTTTACGAATATTTGCAT 139764
| ||||| ||||| || |||||
Sbjct 316 AGGGTTTTCACGAAGATCTGCAT 338
>seq48301
Length=236
Score = 105 bits (116), Expect = 7e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | ||| ||||||| || ||||| || || ||||| || || |
Sbjct 218 CCACCACGAAGACGAAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 159
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||||| || |||||||| || ||||| |||| ||||||||||| || || ||
Sbjct 158 AATGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGGGGA 99
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| ||||| ||||| ||| || ||| | | || | || |||| | |||||||
Sbjct 98 ATACCTTCCTTGTCCTGGATCTTAGCTTTGACGTTGTCAATAGTATCGGAGCTCTCCACC 39
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAA 139755
|||| || | ||||| |||||||| || || |||||
Sbjct 38 TCAAGAGTGATGGTCTTCCCGGTCAATGTCTTAACGAA 1
>seq273
Length=4066651
Score = 100 bits (110), Expect = 3e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606
|| |||| || | ||| | || |||||||| || ||||| || ||| || ||||
Sbjct 887198 AAGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGT 887257
Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666
|||||| | |||||| || ||| |||||| | ||||| || || || ||||| |||
Sbjct 887258 CCGTCTTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCT 887317
Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726
||||| ||| || || | | || | ||||| ||||||||||||| | |||
Sbjct 887318 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 887377
Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
| ||||| |||||||| || || || || || |||||
Sbjct 887378 ATGGTCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 887415
>seq671
Length=818080
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| || ||||| ||||||||||| || || || || | | ||||| |||||
Sbjct 168618 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCAATCTTCCAGCTGC 168559
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| |||||| ||||||| | ||||||| | ||||| || ||||| || || | | ||
Sbjct 168558 TTGCCAGCAAAGATCAGTCTTTGCTGAGCAGGAGGAATTCCTTCCTTATCCTGGGTCTTG 168499
Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741
|||| | ||| | ||| | | ||| || ||||||| ||| | ||||| || ||
Sbjct 168498 GCCTTTATATTTTCTATTGTACCCGAGGGTTCAACCTCAAGGGTGATGGTCTTCCCAGTA 168439
Query 139742 AACGTTTTTACGAATATTTGCAT 139764
| ||||| ||||| | |||||
Sbjct 168438 AGGGTTTTCACGAAAAGCTGCAT 168416
>seq475
Length=1570329
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608
||||| || | ||| | || |||||||| || ||||| || || | ||||
Sbjct 1256095 ACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCC 1256036
Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668
||||| ||||| || || ||| |||| || | ||||| || || || ||||| || ||
Sbjct 1256035 ATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTT 1255976
Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728
|| ||| || || | | || | |||||| ||||||||||||| | ||| |
Sbjct 1255975 ATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGAT 1255916
Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||||| |||| || || ||||| ||||||||
Sbjct 1255915 GGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCAT 1255880
>seq19370
Length=533
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/183 (71%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
||||| ||||||||||| || || ||| || || | || ||||||||||| ||
Sbjct 182 GTAGATTCTTTTTGAATATTGTAGTCGGCCAAGGTACGGCCATCCTCGAGCTGTTTTCCG 123
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686
|| |||||| | |||||||| ||||| |||||||| ||||| ||| |||| | ||
Sbjct 122 GCGAAGATCAACCTCTGCTGATCCGGAGGGATGCCTTCCTTGTC-TTGAATTTTGGCCTT 64
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | || | |||||| || ||| ||||| | || | ||||||||||| | ||
Sbjct 63 GACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTTAGGGT 4
Query 139747 TTT 139749
|||
Sbjct 3 TTT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495670627448800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |