Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq3 129 6e-25
>seq3
Length=9954913
Score = 129 bits (142), Expect = 6e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| |
Sbjct 27230 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 27171
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| | ||| ||||||| ||||| || || |||||||| ||||| || ||||| ||||| |
Sbjct 27170 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAG 27111
Query 14014 CTATTAATCGTTCTCC 14029
||| | ||||||||
Sbjct 27110 CTACAACACGTTCTCC 27095
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/139 (76%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13582
|| || ||| |||| || | |||| ||| || ||| || || || || |||||| |
Sbjct 28624 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGGACTT-GACATCACTCCCATTCT 28566
Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642
||||| || | ||||| ||||||||||||||||| || ||||||||||| ||||| ||
Sbjct 28565 CTGATACTCGCCTACTCTCTTTTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 28506
Query 13643 CATAAAATCAAATGGATTT 13661
||| || ||||| || |||
Sbjct 28505 CATGAAGTCAAACGGGTTT 28487
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479347581692600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |