Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq29432 91.5 1e-13 seq273 89.7 4e-13 seq19201 82.4 6e-11 >seq29432 Length=351 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || || ||||| | ||| | ||| || || || | ||||| || | | Sbjct 112 CCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCC 171 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| |||| || | ||||| || || || ||||||||||| ||||| | || Sbjct 172 AAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAGGG 231 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | ||||| || | | ||||| | |||||| Sbjct 232 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACC 291 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || |||||||| |||||||| || || ||||| || Sbjct 292 TCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 341 >seq273 Length=4066651 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||| || | |||| ||| || || | ||||| ||||||| || ||| |||| ||| Sbjct 887207 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 887266 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 || |||||||||||||| ||||| | ||| || || | || | || ||||| || | Sbjct 887267 AACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCTTGG 887326 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| | ||||| | | | ||||| | | ||| || || | || || || || Sbjct 887327 ATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 887386 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATTTTCT 43114 ||||| | || |||||||| || |||||| ||| Sbjct 887387 CCGGTCAAGGTCTTCACAAAGATCTGCATTGTCT 887420 >seq19201 Length=536 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | |||||||| | | ||| | | |||| |||| || || || || || Sbjct 314 CTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTTCCGTCTTCCAGCTGCTTCCCCGCGAA 373 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||| ||||| ||||| | || | ||||| || || |||| | | || || | Sbjct 374 TATCAGCCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATT 433 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | |||||| | || || |||| ||||| || || || ||||| |||||||| Sbjct 434 GTCGATCGTGTCGGACGATTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCAC 493 Query 43098 AAAAATTTGCATTTT 43112 ||| || |||||||| Sbjct 494 AAAGATCTGCATTTT 508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381074739207462