Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq17663 104 3e-17
seq7730 86.0 9e-12
seq93 86.0 9e-12
seq170 84.2 3e-11
>seq17663
Length=579
Score = 104 bits (114), Expect = 3e-17
Identities = 231/338 (68%), Gaps = 13/338 (4%)
Strand=Plus/Minus
Query 125424 AGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATC 125483
|| ||||| || || || ||| || || |||||||| ||||| || ||| ||||||
Sbjct 368 AGGCTGGTTGCTTTTGCATGCGTCGAAGGAATCTTCTTCTCGGGAAGCTTTTGTGCCATC 309
Query 125484 TTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCT 125543
|| ||||| |||||| | || || ||||| || |||| | |||||| |||||||
Sbjct 308 TTCTGGCTTAAGAAGAGAGGTCTTATGCCGGGTTTGACTTTCTCAAACGAGCTTATATCC 249
Query 125544 CGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCC 125603
|||| ||||| || |||||||||||||| ||| ||| || | ||| | |
Sbjct 248 AGAGATGAGGGGCTTCACTGTGACTTTGCTTGTCTCTTGT------ACAGTTTGC-TGCA 196
Query 125604 GAGTGCAGAT-CCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGA 125662
|| |||| | || | | | |||| | ||| | ||||| || || ||| || ||
Sbjct 195 GA-AGCAGCTCCCTGTGGAG-AAAGTTTATC-AGATTGTTCATGAGGCAGTGGAAATTGA 139
Query 125663 ACAAGAGTTTCTAACCGAATCCCTACC-GGTCAGCATGATTGGCATGAACTGCAAGCTAA 125721
||||||| | | | |||| || || | | | ||||| ||||||| || || |
Sbjct 138 GACAGAGTTTGTCTGCAAGGCCCTTCCATGTGATC-TTATTGGAATGAACTCAAACCTCA 80
Query 125722 TGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTG 125759
|| | |||||||| | ||||| ||||| ||||| |||
Sbjct 79 TGAGTCAGTACATACAATTTGTCGCAGACCGTCTTCTG 42
>seq7730
Length=1237
Score = 86.0 bits (94), Expect = 9e-12
Identities = 214/317 (68%), Gaps = 6/317 (2%)
Strand=Plus/Plus
Query 70052 ACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGC 70111
|| || ||| |||| || || || || || || || ||||| || ||||| |||| ||
Sbjct 481 ACTGAGAGAGAAGAAGGTGACCTTGGACCCGTTTATGGATTTCAATGGAGACACTTTGGT 540
Query 70112 ACCAAGTATGTAGAC-TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGAC 70170
| ||||| ||| ||| | | || ||| | || || || ||||||| | |
Sbjct 541 GCTAAGTACACAGATATGCATG-CTGATTATACTGGCCAAGGATTTGATCAGCTCTCGGA 599
Query 70171 AATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAA 70230
| ||| ||| |||||| |||||| ||| | |||| |||||| | |||||
Sbjct 600 TGTAATTAACAAGATCAAGAACAATCCTGATGATCGACGGATAATAATGTCGGCTTGGAA 659
Query 70231 TCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACT 70289
|||| | || | | |||||||| || || || ||| |||||| | |||||||| |
Sbjct 660 TCCTTCTGACCTTAAGTTGATGGCACTTCCTCCATGCCACATGTTTG-CGCAGTTTTA-T 717
Query 70290 CGTACGA-TGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGT 70348
||| | ||| | | || || |||||||||| | ||||| ||||| || |||
Sbjct 718 GTTACAAATGGAGAGCTTTCGTGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTTGGT 777
Query 70349 GTACCCTTTAACATTGC 70365
||||| |||||||||||
Sbjct 778 GTACCGTTTAACATTGC 794
>seq93
Length=2374459
Score = 86.0 bits (94), Expect = 9e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238
|| ||| | |||||| | | | ||| |||||| || || || ||||| ||||||||
Sbjct 51326 CTTTGGTATGCCATCATTGAGTCGCAGACAGAGACAGGTACCCCATACATGCTCTACAAA 51267
Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298
||| || || || || |||||||| | || |||| || ||||| || |||||||
Sbjct 51266 GATTCCTGTAACCGGAAAAGCAACCAGCAGAACCTGGGAACGATCAAATGCAGCAATCTG 51207
Query 97299 TGCACGGAAATTGTAGAGTA 97318
||||| ||||| ||||||||
Sbjct 51206 TGCACAGAAATAGTAGAGTA 51187
>seq170
Length=9568404
Score = 84.2 bits (92), Expect = 3e-11
Identities = 136/188 (72%), Gaps = 11/188 (6%)
Strand=Plus/Plus
Query 70231 TCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGT--TTGGCTCAGTTTTAC 70288
|||| ||||| ||| | ||||| ||||| ||||| || || || || ||||| |||
Sbjct 9398956 TCCT-CAGATCTGCCTCTCATGGCTCTACCTCCGTGCCA-TGCCCTTTGC-CAGTTCTAC 9399012
Query 70289 -TCGT--ACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTC 70345
| || ||| || | |||| ||| ||||||||||| || |||||||||||
Sbjct 9399013 GTGGTGAACGGTG---AGCTGTCCTGCCAGCTGTATCAGAGGTCAGCAGACATGGGCCTG 9399069
Query 70346 GGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACC 70405
|| || ||||| ||||| || ||||| || || | || ||||||| || ||||| ||
Sbjct 9399070 GGGGTGCCCTTCAACATCGCCAGCTACTCCCTGCTCACCTACATGATCGCGCACATCACT 9399129
Query 70406 GGCCTGAA 70413
||||||||
Sbjct 9399130 GGCCTGAA 9399137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740471549317640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |