Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq17663 104 3e-17 seq7730 86.0 9e-12 seq93 86.0 9e-12 seq170 84.2 3e-11 >seq17663 Length=579 Score = 104 bits (114), Expect = 3e-17 Identities = 231/338 (68%), Gaps = 13/338 (4%) Strand=Plus/Minus Query 125424 AGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATC 125483 || ||||| || || || ||| || || |||||||| ||||| || ||| |||||| Sbjct 368 AGGCTGGTTGCTTTTGCATGCGTCGAAGGAATCTTCTTCTCGGGAAGCTTTTGTGCCATC 309 Query 125484 TTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCT 125543 || ||||| |||||| | || || ||||| || |||| | |||||| ||||||| Sbjct 308 TTCTGGCTTAAGAAGAGAGGTCTTATGCCGGGTTTGACTTTCTCAAACGAGCTTATATCC 249 Query 125544 CGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCC 125603 |||| ||||| || |||||||||||||| ||| ||| || | ||| | | Sbjct 248 AGAGATGAGGGGCTTCACTGTGACTTTGCTTGTCTCTTGT------ACAGTTTGC-TGCA 196 Query 125604 GAGTGCAGAT-CCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGA 125662 || |||| | || | | | |||| | ||| | ||||| || || ||| || || Sbjct 195 GA-AGCAGCTCCCTGTGGAG-AAAGTTTATC-AGATTGTTCATGAGGCAGTGGAAATTGA 139 Query 125663 ACAAGAGTTTCTAACCGAATCCCTACC-GGTCAGCATGATTGGCATGAACTGCAAGCTAA 125721 ||||||| | | | |||| || || | | | ||||| ||||||| || || | Sbjct 138 GACAGAGTTTGTCTGCAAGGCCCTTCCATGTGATC-TTATTGGAATGAACTCAAACCTCA 80 Query 125722 TGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTG 125759 || | |||||||| | ||||| ||||| ||||| ||| Sbjct 79 TGAGTCAGTACATACAATTTGTCGCAGACCGTCTTCTG 42 >seq7730 Length=1237 Score = 86.0 bits (94), Expect = 9e-12 Identities = 214/317 (68%), Gaps = 6/317 (2%) Strand=Plus/Plus Query 70052 ACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGC 70111 || || ||| |||| || || || || || || || ||||| || ||||| |||| || Sbjct 481 ACTGAGAGAGAAGAAGGTGACCTTGGACCCGTTTATGGATTTCAATGGAGACACTTTGGT 540 Query 70112 ACCAAGTATGTAGAC-TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGAC 70170 | ||||| ||| ||| | | || ||| | || || || ||||||| | | Sbjct 541 GCTAAGTACACAGATATGCATG-CTGATTATACTGGCCAAGGATTTGATCAGCTCTCGGA 599 Query 70171 AATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAA 70230 | ||| ||| |||||| |||||| ||| | |||| |||||| | ||||| Sbjct 600 TGTAATTAACAAGATCAAGAACAATCCTGATGATCGACGGATAATAATGTCGGCTTGGAA 659 Query 70231 TCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACT 70289 |||| | || | | |||||||| || || || ||| |||||| | |||||||| | Sbjct 660 TCCTTCTGACCTTAAGTTGATGGCACTTCCTCCATGCCACATGTTTG-CGCAGTTTTA-T 717 Query 70290 CGTACGA-TGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGT 70348 ||| | ||| | | || || |||||||||| | ||||| ||||| || ||| Sbjct 718 GTTACAAATGGAGAGCTTTCGTGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTTGGT 777 Query 70349 GTACCCTTTAACATTGC 70365 ||||| ||||||||||| Sbjct 778 GTACCGTTTAACATTGC 794 >seq93 Length=2374459 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 || ||| | |||||| | | | ||| |||||| || || || ||||| |||||||| Sbjct 51326 CTTTGGTATGCCATCATTGAGTCGCAGACAGAGACAGGTACCCCATACATGCTCTACAAA 51267 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 ||| || || || || |||||||| | || |||| || ||||| || ||||||| Sbjct 51266 GATTCCTGTAACCGGAAAAGCAACCAGCAGAACCTGGGAACGATCAAATGCAGCAATCTG 51207 Query 97299 TGCACGGAAATTGTAGAGTA 97318 ||||| ||||| |||||||| Sbjct 51206 TGCACAGAAATAGTAGAGTA 51187 >seq170 Length=9568404 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/188 (72%), Gaps = 11/188 (6%) Strand=Plus/Plus Query 70231 TCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGT--TTGGCTCAGTTTTAC 70288 |||| ||||| ||| | ||||| ||||| ||||| || || || || ||||| ||| Sbjct 9398956 TCCT-CAGATCTGCCTCTCATGGCTCTACCTCCGTGCCA-TGCCCTTTGC-CAGTTCTAC 9399012 Query 70289 -TCGT--ACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTC 70345 | || ||| || | |||| ||| ||||||||||| || ||||||||||| Sbjct 9399013 GTGGTGAACGGTG---AGCTGTCCTGCCAGCTGTATCAGAGGTCAGCAGACATGGGCCTG 9399069 Query 70346 GGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACC 70405 || || ||||| ||||| || ||||| || || | || ||||||| || ||||| || Sbjct 9399070 GGGGTGCCCTTCAACATCGCCAGCTACTCCCTGCTCACCTACATGATCGCGCACATCACT 9399129 Query 70406 GGCCTGAA 70413 |||||||| Sbjct 9399130 GGCCTGAA 9399137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740471549317640