Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq10281 98.7 8e-16 seq19201 87.8 1e-12 >seq10281 Length=966 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | |||||||||||| || || ||||| || |||| || | |||| Sbjct 702 AAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCGGCCGTCT 643 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| || || ||| | || | ||||||||||||| || | ||| |||||||| Sbjct 642 TCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGGGATGCCTTCTTTGTCT 583 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||||| ||| || | | ||| ||||| |||| || | ||||| || Sbjct 582 TGGATTTTGGCTTTCACGTTGTCGATGGTATCAGAGCTCTCCACCTCCAAAGTAATCGTC 523 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || ||||| ||||| |||||||| Sbjct 522 TTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491 >seq19201 Length=536 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 |||||||| || | | |||| ||| | ||| |||||||| || || ||||||||||| Sbjct 278 TCCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGC 337 Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933 | ||| | |||| |||||||| || ||||| | || || | |||||||||| || Sbjct 338 GAGTGTCCTTCCGTCTTCCAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGG 397 Query 18934 CACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT 18993 | || || ||||| || ||| || || | | ||| || ||| | || Sbjct 398 GATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGATTCAAC 457 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || | ||| || || || || |||| ||||| ||||| || |||||||| Sbjct 458 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414252267727966