Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq475 84.2 1e-11 seq21504 82.4 5e-11 >seq475 Length=1570329 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||| |||| ||||||||||| || || ||||| ||||| | | || | Sbjct 1256094 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 1256035 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||||| || ||| || | | |||||||| | ||| ||||| || || Sbjct 1256034 TCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTA 1255975 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || ||| |||| | || | | ||| |||||| |||| | || ||||| || Sbjct 1255974 TCCTGGATCTTGGCCT---TCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTG 1255918 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || || || || || || |||||||||||||| || Sbjct 1255917 ATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTT 1255877 >seq21504 Length=484 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | ||| |||||||| || || ||||| |||| ||| ||||| | Sbjct 229 CGCAAGACCAAGTGAAGTGTTGACTCTTTCTGGATGTTGTAGTCAG-CAA---GAGTTCG 174 Query 33215 TCA----TCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 || || | ||||||||| || ||||| | ||||||||||| || |||||||| Sbjct 173 TCCATCTTCGAGTTGCTTTCCGGCGAAGATTAACCTTTGCTGGTCCGGTGGGATGCCTTC 114 Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 || || ||| ||| || | | || |||||| | | || || || || Sbjct 113 CTTGTCCTGTATCTTGGTTTTCACGTTGTCGATAGTGTCGGAGCTCTCCACCTCGAGGGT 54 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| ||||| || || || || ||||| || ||||| Sbjct 53 GATCGTCTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318531133014222