Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq29432 107 2e-18
seq19201 93.3 4e-14
seq25626 86.0 5e-12
>seq29432
Length=351
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
|||||| | | ||| ||||| | |||||| ||| || || || |||||||| |||||
Sbjct 111 ACCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGC 170
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| ||| |||| || ||||| || || || | || || |||||||||||| ||
Sbjct 171 CAAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAGG 230
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | ||| ||||| || || ||||| | | ||||| || | |||||
Sbjct 231 GATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGAC 290
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
||||| || ||||| || ||||| || |||||||| || |||||||||
Sbjct 291 CTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATC 339
>seq19201
Length=536
Score = 93.3 bits (102), Expect = 4e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCTC 48576
|| || ||||| || |||||| || ||||||||||| | | | |||| | |||| ||
Sbjct 297 ACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCG-CGAGTGTCCTTCCGTCTTC 355
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
||||||||| || || | || | |||||||||||| || | | ||||||||||
Sbjct 356 CAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGGGATTCCTTCCTTGTCCTG 415
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| ||| ||| | | | || || |||| || || ||| | ||||| || ||
Sbjct 416 GATCTTCGCCTTCACATTGTCGATCGTGTCGGACGATTCAACCTCTAGGGTTATCGTCTT 475
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || || ||||||||||| ||||||||
Sbjct 476 CCCCGTTAGGGTTTTCACAAAGATCTGCAT 505
>seq25626
Length=405
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| ||||||||||| || || || || |||| || |||||||| ||| || |
Sbjct 321 CTCCTTCTGAATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCAAGCTGCTTCCCGGCGAA 262
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|| || | |||||| ||| || | || ||||||||| ||| || |||||
Sbjct 261 GATCAATCTCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTT 202
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| ||||| || | ||| ||| | || || || || ||||||||||| |||||
Sbjct 201 ATCAATGGTGTCTGAGCTCTCAACCTCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCAC 142
Query 48715 AAAAATCTGCAT 48726
||| ||||||||
Sbjct 141 AAAGATCTGCAT 130
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420925504237439
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |