Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq7730 136 5e-27
seq3926 105 8e-18
>seq7730
Length=1237
Score = 136 bits (150), Expect = 5e-27
Identities = 381/566 (67%), Gaps = 29/566 (5%)
Strand=Plus/Minus
Query 6937 TTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAATA 6996
||||| |||||||| | |||||||| ||||| | ||||| |||||| || || |
Sbjct 788 TTAAACGGTACACCAAGACCCATATCGGCTGAGCGCTGATACATTTGACACGA-AAGCTC 730
Query 6997 TTG-TCTATAGCATAAAATTGACACAATACATGA--CATGGAGGTAAAACAGCC-TGATC 7052
| | | || ||||||| || | ||| ||||| |||||||| || ||| | | |
Sbjct 729 TCCATTTGTAACATAAAACTG-CGCAA-ACATGTGGCATGGAGG---AAGTGCCATCAAC 675
Query 7053 TATA--TCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTT 7110
| | ||||| ||||||||||| | ||||| || |||| ||||| ||||| ||| ||
Sbjct 674 TTAAGGTCAGAAGGATTCCAAGCCGACATTATTATCCGTCGATCATCAGGATT-GTTCTT 616
Query 7111 AATTTTGTTATAATTATTTGTAAT---TGATCTATACCCTGACCTTCATAATTAGTATGA 7167
|| |||||| |||| | | ||||| | || || || ||||| || |||
Sbjct 615 GATCTTGTTA--ATTACATCCGAGAGCTGATCAAATCCTTGGCCAGTATAATCAGCATGC 558
Query 7168 CAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCA 7227
|| | | || ||||| ||||| |||||||||||||| ||||||| || || | |||
Sbjct 557 ATATCTGTGTACTTAGCACCAAAGTGTCTCCATTGAAATCCATAAACGGGTCCAAGGTCA 498
Query 7228 CCTTCTTCACGATGATTAAATCCTAATCGATTTAAATTAGATTTTGATCCATAAGCATCC 7287
|||||||| | | | | | ||| | | || | || || | |||| ||| |||||
Sbjct 497 CCTTCTTCTCTCTCAGTCAGTCCAATACCATCAAGATAAGTTCTTGACGCATTCCCATCC 438
Query 7288 CAAATATGTACA-GAtttttttGA--TAAATTTAAAGAATTTGTAGATCCTTTAAGGAAC 7344
|| ||||| | | |||| |||| ||| ||| | ||| || || || | | ||||
Sbjct 437 CATATATGGATACCCTTTTCTTGAAGTAACTTT---GCATTGGTTGAACCGCTTATGAAC 381
Query 7345 CATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAAT 7404
|| | |||||| || || | || | ||| || | ||| ||||| || | | || ||
Sbjct 380 CAAAGAAGTTCCTCAACAACACCTCTCCAGAATACTCTCTTTGTCGTCAGAAGTGGAAAA 321
Query 7405 GTACT---TAAATCATATCTATTCTGTAAACCAAATACTGAAAGAGTACCTGTTCCAGTT 7461
| || |||| | | |||| |||| ||| || | ||||| || || ||
Sbjct 320 TTCCTGCGCAAATTGAACGTCATCTGGCAACCGAATTTAGATAATGTACCAGTCCCTGTC 261
Query 7462 CTATCAAT-TTTAAGTCTTCCATTTG 7486
||||| | ||||||| |||||||||
Sbjct 260 CTATCGTTCTTTAAGT-TTCCATTTG 236
>seq3926
Length=2432
Score = 105 bits (116), Expect = 8e-18
Identities = 247/372 (66%), Gaps = 12/372 (3%)
Strand=Plus/Plus
Query 164605 AAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTT 164664
|| || |||||||||||||| | ||| ||| | ||| |||||| ||||| |||||
Sbjct 891 AAGATCGTTAATGGTCCTGAGGTGCTGAGCAAGTTTGTTGGTGAGACAGAAAAAAATGTG 950
Query 164665 AGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTA 164724
|| | || ||| || ||||| |||| || | || ||| |||||| | ||
Sbjct 951 CGAGACTTATTTGCTGATGCTGAGCAAGACCAGAGGACCCTTGGTGATGCTAGTGAGTTG 1010
Query 164725 CATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAA---AA-------AAC--GTGGT 164772
||||| ||| |||||||||| || |||||| |||| || || ||| | | |
Sbjct 1011 CATGTCATTATTTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGTTCAACCAGAGAT 1070
Query 164773 GATAATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAA 164832
| | | | |||||| | || || ||| | | | || ||||||||||| ||
Sbjct 1071 GGCACAGGTGTCCATGATAGTATTGTAAACCAGCTTTTGACAAAGATAGATGGTGTGGAG 1130
Query 164833 TCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCT 164892
|||| || ||| |||| || | || ||||| ||| || ||||| ||||||| |||
Sbjct 1131 GCCTTGAACAATGTTTTGCTTATTGGAATGACAAACAGAAAGGATTTGCTTGATGAAGCT 1190
Query 164893 TTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGA 164952
| ||| | ||||| |||| || | || | || || | | ||||| ||| ||
Sbjct 1191 CTTTTAAGGCCTGGAAGATTGGAGGTTCAAGTTGAGATTAGCCTCCCCGATGAAGCTGGG 1250
Query 164953 CGCCTTCAAATT 164964
||||| ||||||
Sbjct 1251 CGCCTACAAATT 1262
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595399480952400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |