Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq7730 136 5e-27 seq3926 105 8e-18 >seq7730 Length=1237 Score = 136 bits (150), Expect = 5e-27 Identities = 381/566 (67%), Gaps = 29/566 (5%) Strand=Plus/Minus Query 6937 TTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAATA 6996 ||||| |||||||| | |||||||| ||||| | ||||| |||||| || || | Sbjct 788 TTAAACGGTACACCAAGACCCATATCGGCTGAGCGCTGATACATTTGACACGA-AAGCTC 730 Query 6997 TTG-TCTATAGCATAAAATTGACACAATACATGA--CATGGAGGTAAAACAGCC-TGATC 7052 | | | || ||||||| || | ||| ||||| |||||||| || ||| | | | Sbjct 729 TCCATTTGTAACATAAAACTG-CGCAA-ACATGTGGCATGGAGG---AAGTGCCATCAAC 675 Query 7053 TATA--TCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTT 7110 | | ||||| ||||||||||| | ||||| || |||| ||||| ||||| ||| || Sbjct 674 TTAAGGTCAGAAGGATTCCAAGCCGACATTATTATCCGTCGATCATCAGGATT-GTTCTT 616 Query 7111 AATTTTGTTATAATTATTTGTAAT---TGATCTATACCCTGACCTTCATAATTAGTATGA 7167 || |||||| |||| | | ||||| | || || || ||||| || ||| Sbjct 615 GATCTTGTTA--ATTACATCCGAGAGCTGATCAAATCCTTGGCCAGTATAATCAGCATGC 558 Query 7168 CAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCA 7227 || | | || ||||| ||||| |||||||||||||| ||||||| || || | ||| Sbjct 557 ATATCTGTGTACTTAGCACCAAAGTGTCTCCATTGAAATCCATAAACGGGTCCAAGGTCA 498 Query 7228 CCTTCTTCACGATGATTAAATCCTAATCGATTTAAATTAGATTTTGATCCATAAGCATCC 7287 |||||||| | | | | | ||| | | || | || || | |||| ||| ||||| Sbjct 497 CCTTCTTCTCTCTCAGTCAGTCCAATACCATCAAGATAAGTTCTTGACGCATTCCCATCC 438 Query 7288 CAAATATGTACA-GAtttttttGA--TAAATTTAAAGAATTTGTAGATCCTTTAAGGAAC 7344 || ||||| | | |||| |||| ||| ||| | ||| || || || | | |||| Sbjct 437 CATATATGGATACCCTTTTCTTGAAGTAACTTT---GCATTGGTTGAACCGCTTATGAAC 381 Query 7345 CATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAAT 7404 || | |||||| || || | || | ||| || | ||| ||||| || | | || || Sbjct 380 CAAAGAAGTTCCTCAACAACACCTCTCCAGAATACTCTCTTTGTCGTCAGAAGTGGAAAA 321 Query 7405 GTACT---TAAATCATATCTATTCTGTAAACCAAATACTGAAAGAGTACCTGTTCCAGTT 7461 | || |||| | | |||| |||| ||| || | ||||| || || || Sbjct 320 TTCCTGCGCAAATTGAACGTCATCTGGCAACCGAATTTAGATAATGTACCAGTCCCTGTC 261 Query 7462 CTATCAAT-TTTAAGTCTTCCATTTG 7486 ||||| | ||||||| ||||||||| Sbjct 260 CTATCGTTCTTTAAGT-TTCCATTTG 236 >seq3926 Length=2432 Score = 105 bits (116), Expect = 8e-18 Identities = 247/372 (66%), Gaps = 12/372 (3%) Strand=Plus/Plus Query 164605 AAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTT 164664 || || |||||||||||||| | ||| ||| | ||| |||||| ||||| ||||| Sbjct 891 AAGATCGTTAATGGTCCTGAGGTGCTGAGCAAGTTTGTTGGTGAGACAGAAAAAAATGTG 950 Query 164665 AGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTA 164724 || | || ||| || ||||| |||| || | || ||| |||||| | || Sbjct 951 CGAGACTTATTTGCTGATGCTGAGCAAGACCAGAGGACCCTTGGTGATGCTAGTGAGTTG 1010 Query 164725 CATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAA---AA-------AAC--GTGGT 164772 ||||| ||| |||||||||| || |||||| |||| || || ||| | | | Sbjct 1011 CATGTCATTATTTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGTTCAACCAGAGAT 1070 Query 164773 GATAATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAA 164832 | | | | |||||| | || || ||| | | | || ||||||||||| || Sbjct 1071 GGCACAGGTGTCCATGATAGTATTGTAAACCAGCTTTTGACAAAGATAGATGGTGTGGAG 1130 Query 164833 TCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCT 164892 |||| || ||| |||| || | || ||||| ||| || ||||| ||||||| ||| Sbjct 1131 GCCTTGAACAATGTTTTGCTTATTGGAATGACAAACAGAAAGGATTTGCTTGATGAAGCT 1190 Query 164893 TTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGA 164952 | ||| | ||||| |||| || | || | || || | | ||||| ||| || Sbjct 1191 CTTTTAAGGCCTGGAAGATTGGAGGTTCAAGTTGAGATTAGCCTCCCCGATGAAGCTGGG 1250 Query 164953 CGCCTTCAAATT 164964 ||||| |||||| Sbjct 1251 CGCCTACAAATT 1262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595399480952400