Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_006146.1
Length=171096
Score E
Sequences producing significant alignments: (Bits) Value
seq356 120 3e-22
>seq356
Length=1899616
Score = 120 bits (132), Expect = 3e-22
Identities = 110/139 (79%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199
|||| |||||||| || || ||| |||| || ||||||||||||||| ||||||| || |
Sbjct 754421 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACTTGGAGGAGGTGA 754480
Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259
|||| |||||||| | |||||||| | ||| ||||||||||||| || || || |
Sbjct 754481 TGCCCCAGGCTGAGAGCCAGGACCCAGAGATCAAGAAGCACGTGAACTCCCTCGGGGAAA 754540
Query 10260 ATCTAAAGACCCTAAGGCT 10278
| || ||||| || |||||
Sbjct 754541 ACCTGAAGACGCTCAGGCT 754559
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418
|||| || || ||||| |||||||||||||||||||| || || || || || ||||| |
Sbjct 756674 AGCTCCAAGAGAAAGGGGTCTACAAAGCCATGAGTGAGTTCGATATCTTCATCAACTACA 756733
Query 10419 TAGAAGCATACATGAC 10434
||||||| ||||||||
Sbjct 756734 TAGAAGCCTACATGAC 756749
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546945135136640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |