Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq135 174 2e-38 seq79 104 3e-17 >seq135 Length=5734681 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| | |||||| |||||||||||| || |||| || ||||| |||||| Sbjct 1835266 GTCTGGAACAACCGCTCGTCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 1835325 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| ||||| | |||||| || || || |||||||| ||||| |||||||| ||||| Sbjct 1835326 CTGTTATGTTCTCGGAGCCAAATCGTGGCATACATCATCAGACCCGGCACCAGACCAAAC 1835385 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | |||| | ||| || || | || ||||||||||| | | Sbjct 1835386 ACCTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGGACATGAGGGGGATAGATCATCTCC 1835445 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 |||| ||||||||| | ||| |||||||| || || ||||| |||| Sbjct 1835446 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 1835494 Score = 143 bits (158), Expect = 4e-29 Identities = 202/284 (71%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||| |||| ||||| | |||| ||||||||||| | ||| | |||| ||| | Sbjct 1833716 GGACAGCCTTGCACGTTATTGCAGATGAGAGACTGGATTGAGGCAGTGTTGATGATTTTA 1833775 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || || || ||||| || || ||||| ||||||||||| || || || || || Sbjct 1833776 AAACCTACTTCTCCACCAAAAGTGCTCGGTTTCCAGTAGTTAGGAGAACATATAGGATTG 1833835 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 |||| || ||||| | ||| || || || || || || | ||| ||||||| |||||| Sbjct 1833836 CCCATAAGTCCTTTCAAGGAGAAAGGTGCGCCAAGTTCTACCATGGTCTCACCAAAGATG 1833895 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 || | | || |||||||| ||||| | | | |||| ||||| || |||||||| Sbjct 1833896 GCATCTGTGCGTGGCTTTTCTACCAAAAGGGCAGGATACAGCTCCATGGCATCGATGTCC 1833955 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || || ||||| | || ||||| |||||||| |||||||| Sbjct 1833956 CCATAGAGGGCTTCTAACTCTGCAGCCATTTCCTTCTCTCCTGT 1833999 Score = 131 bits (144), Expect = 2e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 1836379 TCTTACCCCATGCCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTGTGATCTGTCTTGAA 1836438 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| || || ||||||||||| || Sbjct 1836439 AAACTGATGGGTGAAGTGCTGGGCAAAGAACGCAAACATCAAATTTGTGCCCTGGGGGTC 1836498 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || || || |||| |||||| ||||||||||| | | ||| || || | Sbjct 1836499 AGGGACAAACGTTCTCCTTAGAAGAAATTTTTCCACAATCAATTTTGAATCAGGAAGCTC 1836558 Query 10208 ttttttACCTGGTGAACGAGAA 10229 ||| || |||| |||||||| Sbjct 1836559 TTTCTTTCCTGAAAAACGAGAA 1836580 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | ||||| ||||| |||| || || ||||| ||| || | Sbjct 1836867 TCACCTTTCACGCCCATGGGAGTGGGACAGTCGTCAGCCACAGGAGGAAGAGCTCTGGTA 1836926 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||||| ||| || || |||||||||||| || | || | || |||||| | Sbjct 1836927 TAATAGGAGATATTAGAAAAGGCTTCCCAGCTTTTATAGCCATACTGTGCATTGTAGGTT 1836986 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || |||||||||||||||| ||||| ||||| Sbjct 1836987 GGCGGGCTGTCAATCAAATGTGATCTGGCTGAA 1837019 Score = 87.8 bits (96), Expect = 3e-12 Identities = 184/267 (69%), Gaps = 8/267 (3%) Strand=Plus/Plus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | |||| ||||| || | |||||||| || || | Sbjct 1834648 CTTACCCTGCCAGCAATTTGCCTGCTGAATGATTCAACAAACTGGGTAAGCCCATGTTCC 1834707 Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTT-TGTTTTATCAATC 9438 || | || || |||||||| | || || ||| || |||| || | | |||||| Sbjct 1834708 ATTAACATAGAGTTGTTGTAGAGAAACTGTCGATG--GTTGTACTCCTGGTCT-TCAATC 1834764 Query 9439 TCAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9498 | ||| | || |||| ||| | ||||||||| || | | |||||||||| | | || Sbjct 1834765 TGAAAGGTGTCAGGCAGGAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCAATG 1834824 Query 9499 CGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAA 9557 || |||||||||||||| | | ||| ||||| || || | |||| || | || Sbjct 1834825 CGGTTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAA 1834883 Query 9558 GTGGTAGCCGCTGAGCTGCTGAACATA 9584 ||| ||||| || | ||||| || || Sbjct 1834884 GTGATAGCCACTCAAGTGCTGTACGTA 1834910 >seq79 Length=6501104 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || |||| || || || || ||||| | ||||| || | || || |||||| ||| Sbjct 6423990 AAGCCCATCTCGCCACCAAATGTGCTCGACTTCCAATATTCAGGAGAACAGATGGGATTC 6423931 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||| ||||||||||| |||||||| | || | || ||||| || |||||| Sbjct 6423930 CCTAAGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATACTCTCCCCAAAGATG 6423871 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| ||| || ||| || | | | ||| | ||| ||||||| || || |||||| Sbjct 6423870 GAGTTTGGATGGCACTTCTCAAGAAGCAGTCCCGGGTAGAACTCCAAGGCATCAATGTCT 6423811 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 ||||| || || | || || || || |||| |||||| Sbjct 6423810 CCGTATAGCTCCTCCAACTCAGCTGCCATCTCCTCCTCTCCT 6423769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707962948690160