Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq135 174 2e-38
seq79 104 3e-17
>seq135
Length=5734681
Score = 174 bits (192), Expect = 2e-38
Identities = 176/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| |||| | |||||| |||||||||||| || |||| || ||||| ||||||
Sbjct 1835266 GTCTGGAACAACCGCTCGTCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACACT 1835325
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
||||| ||||| | |||||| || || || |||||||| ||||| |||||||| |||||
Sbjct 1835326 CTGTTATGTTCTCGGAGCCAAATCGTGGCATACATCATCAGACCCGGCACCAGACCAAAC 1835385
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
|||| || || ||||| | |||| | ||| || || | || ||||||||||| | |
Sbjct 1835386 ACCTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGGACATGAGGGGGATAGATCATCTCC 1835445
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862
|||| ||||||||| | ||| |||||||| || || ||||| ||||
Sbjct 1835446 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 1835494
Score = 143 bits (158), Expect = 4e-29
Identities = 202/284 (71%), Gaps = 0/284 (0%)
Strand=Plus/Plus
Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752
||||| |||| ||||| | |||| ||||||||||| | ||| | |||| ||| |
Sbjct 1833716 GGACAGCCTTGCACGTTATTGCAGATGAGAGACTGGATTGAGGCAGTGTTGATGATTTTA 1833775
Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812
|| || || ||||| || || ||||| ||||||||||| || || || || ||
Sbjct 1833776 AAACCTACTTCTCCACCAAAAGTGCTCGGTTTCCAGTAGTTAGGAGAACATATAGGATTG 1833835
Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872
|||| || ||||| | ||| || || || || || || | ||| ||||||| ||||||
Sbjct 1833836 CCCATAAGTCCTTTCAAGGAGAAAGGTGCGCCAAGTTCTACCATGGTCTCACCAAAGATG 1833895
Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932
|| | | || |||||||| ||||| | | | |||| ||||| || ||||||||
Sbjct 1833896 GCATCTGTGCGTGGCTTTTCTACCAAAAGGGCAGGATACAGCTCCATGGCATCGATGTCC 1833955
Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976
|| || ||||| | || ||||| |||||||| ||||||||
Sbjct 1833956 CCATAGAGGGCTTCTAACTCTGCAGCCATTTCCTTCTCTCCTGT 1833999
Score = 131 bits (144), Expect = 2e-25
Identities = 150/202 (74%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | ||
Sbjct 1836379 TCTTACCCCATGCCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTGTGATCTGTCTTGAA 1836438
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
|||||| || ||||| || ||| |||| || |||||||| || || ||||||||||| ||
Sbjct 1836439 AAACTGATGGGTGAAGTGCTGGGCAAAGAACGCAAACATCAAATTTGTGCCCTGGGGGTC 1836498
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207
|| || || |||| |||||| ||||||||||| | | ||| || || |
Sbjct 1836499 AGGGACAAACGTTCTCCTTAGAAGAAATTTTTCCACAATCAATTTTGAATCAGGAAGCTC 1836558
Query 10208 ttttttACCTGGTGAACGAGAA 10229
||| || |||| ||||||||
Sbjct 1836559 TTTCTTTCCTGAAAAACGAGAA 1836580
Score = 100 bits (110), Expect = 4e-16
Identities = 114/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346
|||||||| || || | ||||| ||||| |||| || || ||||| ||| || |
Sbjct 1836867 TCACCTTTCACGCCCATGGGAGTGGGACAGTCGTCAGCCACAGGAGGAAGAGCTCTGGTA 1836926
Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406
|||||||||| ||| || || |||||||||||| || | || | || |||||| |
Sbjct 1836927 TAATAGGAGATATTAGAAAAGGCTTCCCAGCTTTTATAGCCATACTGTGCATTGTAGGTT 1836986
Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|| |||||||||||||||| ||||| |||||
Sbjct 1836987 GGCGGGCTGTCAATCAAATGTGATCTGGCTGAA 1837019
Score = 87.8 bits (96), Expect = 3e-12
Identities = 184/267 (69%), Gaps = 8/267 (3%)
Strand=Plus/Plus
Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381
||||| | |||||| ||||| | |||| ||||| || | |||||||| || || |
Sbjct 1834648 CTTACCCTGCCAGCAATTTGCCTGCTGAATGATTCAACAAACTGGGTAAGCCCATGTTCC 1834707
Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTT-TGTTTTATCAATC 9438
|| | || || |||||||| | || || ||| || |||| || | | ||||||
Sbjct 1834708 ATTAACATAGAGTTGTTGTAGAGAAACTGTCGATG--GTTGTACTCCTGGTCT-TCAATC 1834764
Query 9439 TCAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9498
| ||| | || |||| ||| | ||||||||| || | | |||||||||| | | ||
Sbjct 1834765 TGAAAGGTGTCAGGCAGGAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGCAGCAATG 1834824
Query 9499 CGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAA 9557
|| |||||||||||||| | | ||| ||||| || || | |||| || | ||
Sbjct 1834825 CGGTTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAA 1834883
Query 9558 GTGGTAGCCGCTGAGCTGCTGAACATA 9584
||| ||||| || | ||||| || ||
Sbjct 1834884 GTGATAGCCACTCAAGTGCTGTACGTA 1834910
>seq79
Length=6501104
Score = 104 bits (114), Expect = 3e-17
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812
|| |||| || || || || ||||| | ||||| || | || || |||||| |||
Sbjct 6423990 AAGCCCATCTCGCCACCAAATGTGCTCGACTTCCAATATTCAGGAGAACAGATGGGATTC 6423931
Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872
| | |||||| ||||||||||| |||||||| | || | || ||||| || ||||||
Sbjct 6423930 CCTAAGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATACTCTCCCCAAAGATG 6423871
Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932
| ||| ||| || ||| || | | | ||| | ||| ||||||| || || ||||||
Sbjct 6423870 GAGTTTGGATGGCACTTCTCAAGAAGCAGTCCCGGGTAGAACTCCAAGGCATCAATGTCT 6423811
Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974
||||| || || | || || || || |||| ||||||
Sbjct 6423810 CCGTATAGCTCCTCCAACTCAGCTGCCATCTCCTCCTCTCCT 6423769
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 707962948690160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |