Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq19003 168 1e-37 seq17024 149 1e-31 seq604 140 5e-29 seq31509 138 2e-28 seq23539 134 2e-27 seq22420 118 2e-22 seq54923 89.7 8e-14 seq54480 84.2 3e-12 >seq19003 Length=542 Score = 168 bits (186), Expect = 1e-37 Identities = 177/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||||||||| || || |||||||| |||||||||||||| ||| Sbjct 446 GATAACATCCAAGGTATCACCAAGCCTGCCATTCGTCGTCTTGCTCGTCGTGGTGGCGTC 387 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| | |||| || |||| | | || | |||||||||||| || Sbjct 386 AAGCGTATCAGTGGCCTCATCTACGAGGAGACCAGAGGAGTCCTCAAGATCTTCCTCGAG 327 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| || || || ||| ||||||||||| | ||||| |||||| || Sbjct 326 AATGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCAGGAAGACCGTCACCGCC 267 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||||| |||||||||| ||||| | ||||| |||| | || ||||| || Sbjct 266 ATGGATGTCGTCTATGCTTTGAAGAGGCAAGGGCGTACCTTGTACGGTTTCGG 214 >seq17024 Length=599 Score = 149 bits (164), Expect = 1e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| |||||||||||||| || ||||| | |||||||| | ||||||| Sbjct 470 GAGACAACATCCAGGGAATCACCAAGCCGGCGATCCGGAGGTTGGCTCGTAGAGGTGGAG 411 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || ||| || |||| || |||| |||| || | |||||||| | Sbjct 410 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGAGTCCTCAAGATCTTTTTGG 351 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || |||| ||| || || ||| ||||||||||| | | |||||||| ||| Sbjct 350 AGAATGTCATCCGTGACGCCGTCACCTACACCGAGCACGCCAGGAGGAAGACTGTTACCG 291 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 ||||||| |||||||||| | || | ||||| | | | |||| || || || ||| Sbjct 290 CCATGGACGTCGTCTATGCGCTCAAGAGGCAAGGGAGGACGCTTTACGGGTTCGGCGGTT 231 Query 16698 AA 16699 || Sbjct 230 AA 229 >seq604 Length=510426 Score = 140 bits (154), Expect = 5e-29 Identities = 179/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 264986 CGCTAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 265044 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 265045 TCCGGCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGA 265104 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 265105 CCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGG 265164 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | || ||||| | || || || | Sbjct 265165 AGCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTTTATGCCCTTAAGCGCCAGG 265224 Query 16671 GCCG 16674 |||| Sbjct 265225 GCCG 265228 Score = 136 bits (150), Expect = 6e-28 Identities = 178/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 363705 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 363763 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 363764 TCCGGCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGA 363823 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 363824 CCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGG 363883 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| |||||||| | || || || | ||||| || | Sbjct 363884 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGATGTGGTTTACGCTCTCAAACGCCAGG 363943 Query 16671 GCCG 16674 |||| Sbjct 363944 GCCG 363947 Score = 131 bits (144), Expect = 3e-26 Identities = 177/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 128960 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 128902 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 128901 TCCGGCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGA 128842 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 128841 CCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGG 128782 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | ||||| || | || || || | Sbjct 128781 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 128722 Query 16671 GCCG 16674 |||| Sbjct 128721 GCCG 128718 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 66885 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 66943 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || ||||| || |||| || | |||| || |||| Sbjct 66944 TCCGGCGCCTGGCCCGGCGCGGCGGCGTCAAACGCATCTCCGGGCTCATCTACGAGGAGA 67003 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 67004 CCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGG 67063 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | ||||| || | || || || | Sbjct 67064 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 67123 Query 16671 GCCG 16674 |||| Sbjct 67124 GCCG 67127 >seq31509 Length=328 Score = 138 bits (152), Expect = 2e-28 Identities = 167/225 (74%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||| ||||| ||||||||||| |||||||| || || || Sbjct 42 GCCAAGAGGCATCGGAAAGTTCTCCGAGACAACATCCAAGGGATCACCAAACCTGCGATT 101 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| | | || ||||| |||||| || ||| ||| |||| ||||||| | Sbjct 102 CGTCGTCTGGCGAGAAGAGGAGGAGTGAAGCGTATCAGTGGTTTGATCTACGAAGAGACT 161 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG-CTTTCCACTATACCGA 16611 || | ||| | |||||||| || ||| |||||||| ||| | | || || || || || Sbjct 162 CGCGGCGTTCTCAAGATCTTTCTAGAGAACGTTATCCGTGACGCCGTTACA-TACACGGA 220 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||||| || || || ||||| | ||||| |||| || || Sbjct 221 GCACGCTCGCCGGAAAACAGTCACGGCGATGGACGTCGTGTACGC 265 >seq23539 Length=441 Score = 134 bits (148), Expect = 2e-27 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| |||||||| || || || ||||| || || |||||||| || | | ||| Sbjct 52 CTCCGAGACAACATCCAGGGGATTACGAAGCCGGCGATTCGTCGTCTAGCGAGAAGAGGT 111 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| || || ||| |||| || |||| ||| | |||| | ||||||||| Sbjct 112 GGTGTGAAGCGTATCAGCGGTTTGATCTACGAGGAGACTCGCGGTGTTCTTAAGATCTTC 171 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| || || | || || || || || ||||||||| || ||||| ||| Sbjct 172 CTCGAGAATGTGATTCGCGACGCCGTCACTTACACTGAGCACGCTCGCCGGAAGACGGTC 231 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| |||||||||| ||||| | || || |||| | || ||||| || Sbjct 232 ACGGCGATGGATGTCGTCTATGCTTTGAAGAGGCAGGGACGTACTCTGTACGGTTTCGG 290 >seq22420 Length=464 Score = 118 bits (130), Expect = 2e-22 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||||||||| ||||||||||||||||| ||||| || || | ||||| |||||| | || Sbjct 348 TCTTCGAGACAACATCCAAGGAATCACAAAGCCTGCGATTAGGCGTCTCGCTCGTAGAGG 289 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || ||| | || || ||| |||| ||||| | | | || ||||||||||| Sbjct 288 AGGCGTGAAGAGAATCAGCGGTTTGATCTACGAAGAAACGAGAGGAGTCTTGAAGATCTT 229 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| || ||| || ||| | || || |||||||| | | |||||||| Sbjct 228 TCTCGAGAATGTCATCAGAGACGCTGTGACTTACACTGAGCACGCGAGGAGGAAGACTGT 169 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| | || || || ||||| | ||||| || | ||||||| || || Sbjct 168 TACGGCCATGGACGTTGTTTACGCTTTGAAGAGGCAAGGACGCACTCTTTATGGATTCGG 109 >seq54923 Length=217 Score = 89.7 bits (98), Expect = 8e-14 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||||||||||||||||||||| || || || ||| |||||||| | || || | Sbjct 106 GAGATAACATCCAAGGAATCACCAAGCCGGCGATTCGGCGTTTGGCTCGTAGAGGAGGCG 47 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTG 16556 |||||||| || || || |||| || |||| |||| Sbjct 46 TCAAGCGTATCAGCGGCCTGATCTACGAGGAGACACGTG 8 >seq54480 Length=219 Score = 84.2 bits (92), Expect = 3e-12 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||||||||||||||||||||| || || || ||| |||||||| | || || | Sbjct 106 GAGATAACATCCAAGGAATCACCAAGCCGGCGATTCGGCGTTTGGCTCGTAGAGGAGGCG 47 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTG 16556 |||||||| || || | |||| || |||| |||| Sbjct 46 TCAAGCGTATCAGCGGCCTCATCTACGAGGAGACACGTG 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79017197278227