Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq19003 168 1e-37
seq17024 149 1e-31
seq604 140 5e-29
seq31509 138 2e-28
seq23539 134 2e-27
seq22420 118 2e-22
seq54923 89.7 8e-14
seq54480 84.2 3e-12
>seq19003
Length=542
Score = 168 bits (186), Expect = 1e-37
Identities = 177/233 (76%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|||||||||||||| ||||||||||| || || |||||||| |||||||||||||| |||
Sbjct 446 GATAACATCCAAGGTATCACCAAGCCTGCCATTCGTCGTCTTGCTCGTCGTGGTGGCGTC 387
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
|||||| || ||| | |||| || |||| | | || | |||||||||||| ||
Sbjct 386 AAGCGTATCAGTGGCCTCATCTACGAGGAGACCAGAGGAGTCCTCAAGATCTTCCTCGAG 327
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| || |||| || || || ||| ||||||||||| | ||||| |||||| ||
Sbjct 326 AATGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCAGGAAGACCGTCACCGCC 267
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|||||| |||||||||| ||||| | ||||| |||| | || ||||| ||
Sbjct 266 ATGGATGTCGTCTATGCTTTGAAGAGGCAAGGGCGTACCTTGTACGGTTTCGG 214
>seq17024
Length=599
Score = 149 bits (164), Expect = 1e-31
Identities = 178/242 (74%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| |||||||| |||||||||||||| || ||||| | |||||||| | |||||||
Sbjct 470 GAGACAACATCCAGGGAATCACCAAGCCGGCGATCCGGAGGTTGGCTCGTAGAGGTGGAG 411
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
|||||||| || ||| || |||| || |||| |||| || | |||||||| |
Sbjct 410 TCAAGCGTATCAGTGGTCTGATCTACGAGGAGACACGTGGAGTCCTCAAGATCTTTTTGG 351
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| || |||| ||| || || ||| ||||||||||| | | |||||||| |||
Sbjct 350 AGAATGTCATCCGTGACGCCGTCACCTACACCGAGCACGCCAGGAGGAAGACTGTTACCG 291
Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697
||||||| |||||||||| | || | ||||| | | | |||| || || || |||
Sbjct 290 CCATGGACGTCGTCTATGCGCTCAAGAGGCAAGGGAGGACGCTTTACGGGTTCGGCGGTT 231
Query 16698 AA 16699
||
Sbjct 230 AA 229
>seq604
Length=510426
Score = 140 bits (154), Expect = 5e-29
Identities = 179/244 (73%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||||||||| || |||| | || || || || |||||||| || ||||||||||| || |
Sbjct 264986 CGCTAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 265044
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 265045 TCCGGCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGA 265104
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || ||||| | ||||| ||| ||| |||| || || || ||| || |
Sbjct 265105 CCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGG 265164
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| |||||| ||||||| | || ||||| | || || || |
Sbjct 265165 AGCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTTTATGCCCTTAAGCGCCAGG 265224
Query 16671 GCCG 16674
||||
Sbjct 265225 GCCG 265228
Score = 136 bits (150), Expect = 6e-28
Identities = 178/244 (73%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| | || || || || |||||||| || ||||||||||| || |
Sbjct 363705 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 363763
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 363764 TCCGGCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGA 363823
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || ||||| | ||||| ||| ||| |||| || || || ||| || |
Sbjct 363824 CCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGG 363883
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||| |||||||| | || || || | ||||| || |
Sbjct 363884 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGATGTGGTTTACGCTCTCAAACGCCAGG 363943
Query 16671 GCCG 16674
||||
Sbjct 363944 GCCG 363947
Score = 131 bits (144), Expect = 3e-26
Identities = 177/244 (73%), Gaps = 2/244 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| | || || || || |||||||| || ||||||||||| || |
Sbjct 128960 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 128902
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 128901 TCCGGCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGA 128842
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || ||||| | ||||| ||| ||| |||| || || || ||| || |
Sbjct 128841 CCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGG 128782
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||| ||||||| | ||||| || | || || || |
Sbjct 128781 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 128722
Query 16671 GCCG 16674
||||
Sbjct 128721 GCCG 128718
Score = 127 bits (140), Expect = 3e-25
Identities = 176/244 (72%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| | || || || || |||||||| || ||||||||||| || |
Sbjct 66885 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 66943
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || ||||| || || || || ||||| || |||| || | |||| || ||||
Sbjct 66944 TCCGGCGCCTGGCCCGGCGCGGCGGCGTCAAACGCATCTCCGGGCTCATCTACGAGGAGA 67003
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || ||||| | ||||| ||| ||| |||| || || || ||| || |
Sbjct 67004 CCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACGG 67063
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||| ||||||| | ||||| || | || || || |
Sbjct 67064 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 67123
Query 16671 GCCG 16674
||||
Sbjct 67124 GCCG 67127
>seq31509
Length=328
Score = 138 bits (152), Expect = 2e-28
Identities = 167/225 (74%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||| | ||||| | | ||| ||||| ||||||||||| |||||||| || || ||
Sbjct 42 GCCAAGAGGCATCGGAAAGTTCTCCGAGACAACATCCAAGGGATCACCAAACCTGCGATT 101
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||||||||| | | || ||||| |||||| || ||| ||| |||| ||||||| |
Sbjct 102 CGTCGTCTGGCGAGAAGAGGAGGAGTGAAGCGTATCAGTGGTTTGATCTACGAAGAGACT 161
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG-CTTTCCACTATACCGA 16611
|| | ||| | |||||||| || ||| |||||||| ||| | | || || || || ||
Sbjct 162 CGCGGCGTTCTCAAGATCTTTCTAGAGAACGTTATCCGTGACGCCGTTACA-TACACGGA 220
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656
||||||| || || || ||||| | ||||| |||| || ||
Sbjct 221 GCACGCTCGCCGGAAAACAGTCACGGCGATGGACGTCGTGTACGC 265
>seq23539
Length=441
Score = 134 bits (148), Expect = 2e-27
Identities = 173/239 (72%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| ||||| |||||||| || || || ||||| || || |||||||| || | | |||
Sbjct 52 CTCCGAGACAACATCCAGGGGATTACGAAGCCGGCGATTCGTCGTCTAGCGAGAAGAGGT 111
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || |||||| || || ||| |||| || |||| ||| | |||| | |||||||||
Sbjct 112 GGTGTGAAGCGTATCAGCGGTTTGATCTACGAGGAGACTCGCGGTGTTCTTAAGATCTTC 171
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| || || | || || || || || ||||||||| || ||||| |||
Sbjct 172 CTCGAGAATGTGATTCGCGACGCCGTCACTTACACTGAGCACGCTCGCCGGAAGACGGTC 231
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| | |||||| |||||||||| ||||| | || || |||| | || ||||| ||
Sbjct 232 ACGGCGATGGATGTCGTCTATGCTTTGAAGAGGCAGGGACGTACTCTGTACGGTTTCGG 290
>seq22420
Length=464
Score = 118 bits (130), Expect = 2e-22
Identities = 170/240 (71%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
||||||||| ||||||||||||||||| ||||| || || | ||||| |||||| | ||
Sbjct 348 TCTTCGAGACAACATCCAAGGAATCACAAAGCCTGCGATTAGGCGTCTCGCTCGTAGAGG 289
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
|| || ||| | || || ||| |||| ||||| | | | || |||||||||||
Sbjct 288 AGGCGTGAAGAGAATCAGCGGTTTGATCTACGAAGAAACGAGAGGAGTCTTGAAGATCTT 229
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
||| ||| || ||| || ||| | || || |||||||| | | ||||||||
Sbjct 228 TCTCGAGAATGTCATCAGAGACGCTGTGACTTACACTGAGCACGCGAGGAGGAAGACTGT 169
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| ||||||| | || || || ||||| | ||||| || | ||||||| || ||
Sbjct 168 TACGGCCATGGACGTTGTTTACGCTTTGAAGAGGCAAGGACGCACTCTTTATGGATTCGG 109
>seq54923
Length=217
Score = 89.7 bits (98), Expect = 8e-14
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||||||||||||||||||||||||||| || || || ||| |||||||| | || || |
Sbjct 106 GAGATAACATCCAAGGAATCACCAAGCCGGCGATTCGGCGTTTGGCTCGTAGAGGAGGCG 47
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTG 16556
|||||||| || || || |||| || |||| ||||
Sbjct 46 TCAAGCGTATCAGCGGCCTGATCTACGAGGAGACACGTG 8
>seq54480
Length=219
Score = 84.2 bits (92), Expect = 3e-12
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||||||||||||||||||||||||||| || || || ||| |||||||| | || || |
Sbjct 106 GAGATAACATCCAAGGAATCACCAAGCCGGCGATTCGGCGTTTGGCTCGTAGAGGAGGCG 47
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTG 16556
|||||||| || || | |||| || |||| ||||
Sbjct 46 TCAAGCGTATCAGCGGCCTCATCTACGAGGAGACACGTG 8
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79017197278227
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