Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq782 230 3e-55
seq93 134 2e-26
seq3 123 3e-23
seq514 107 2e-18
>seq782
Length=486663
Score = 230 bits (254), Expect = 3e-55
Identities = 316/440 (72%), Gaps = 9/440 (2%)
Strand=Plus/Minus
Query 62034 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 62093
|| ||||| || || |||| ||| | |||| ||||| || |||||||| || ||||||
Sbjct 446721 TAATACATACCAGTCTTTAAACCCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTG 446662
Query 62094 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 62153
||| | | | || ||||| |||| ||| || |||||||| ||||| || ||
Sbjct 446661 CCATAGTTAGCA------ATGTGGATGTTCAGAGACTGGCTTTGATCAATGAAAGCACCT 446608
Query 62154 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT 62213
|| || || ||||| || | || || || || | |||||||| | ||| ||||||| |
Sbjct 446607 CTCTCAGCTGCCATCTTGAGAATGGTTTTCTGAGAGATTTCCCATACAGTCTTATAAAGT 446548
Query 62214 CGCTTAATATCTTCTGGAAGGTTTG-TAT--TCTGAATGGATCCACCATCTGCCATAATC 62270
|||| | || || |||| | || ||| |||| || || ||| ||| ||||||
Sbjct 446547 TGCTTCAAGTCATCAGGAATTTCTGATATGCTCTGGATAGAGCCATTGCATGCAATAATC 446488
Query 62271 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 62330
||| || ||||| |||||||| || ||| | | | || | || | || |||
Sbjct 446487 TGATTTTTCATCTCTTCATTCCACAAGCCCTGCTCAATCAGATCTTTCAGTAAGTGAGGA 446428
Query 62331 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62390
|| || | ||||||||||| ||||| ||||| |||||||| || || |||||| | |||
Sbjct 446427 TTTACAATCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTACATGGT 446368
Query 62391 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62450
|| | |||||||||||||||| || ||||||||||| ||||| ||||| || || |
Sbjct 446367 TCAATGGACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATA 446308
Query 62451 AATAAACTATTTCTAAGACC 62470
| |||||||||||| | |||
Sbjct 446307 AGTAAACTATTTCTTATACC 446288
>seq93
Length=2374459
Score = 134 bits (148), Expect = 2e-26
Identities = 112/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396
|| ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| |
Sbjct 38940 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 38999
Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456
|||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 39000 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 39059
Query 62457 CTATTTCTAAGACCGTA 62473
|||||||| | ||| ||
Sbjct 39060 CTATTTCTTATACCATA 39076
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271
|| |||||||||||| |||||||| ||||||||||| || | || || || |||| |
Sbjct 52511 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 52570
Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331
|| || || |||||||| ||||| || | ||| || ||| | | || || |||||||
Sbjct 52571 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 52630
Query 63332 CGGTTCCAAGTATATGGC 63349
|| |||||||| || ||
Sbjct 52631 AGGCTCCAAGTAAATAGC 52648
Score = 87.8 bits (96), Expect = 2e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636
|| || || ||||| || | || || || || ||||| || || || || || || |||
Sbjct 47799 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 47858
Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 62696
||||||||||| ||||| | |||||| | || || || | || ||||| |||||
Sbjct 47859 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 47918
Query 62697 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62756
| | |||||||| || || || | ||||| || ||||| || || || | ||| |
Sbjct 47919 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACTCCAATTCCAATGGGGCGATGGCGT 47978
Query 62757 TTATTAGA 62764
||||| ||
Sbjct 47979 TTATTTGA 47986
>seq3
Length=9954913
Score = 123 bits (136), Expect = 3e-23
Identities = 100/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| ||||| ||||| |||||||| ||||| || ||||| || || || || |
Sbjct 27230 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 27171
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| ||||| || || || || |||||||||||||||||||||||||| ||||| |
Sbjct 27170 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAG 27111
Query 33446 C 33446
|
Sbjct 27110 C 27110
Score = 98.7 bits (108), Expect = 1e-15
Identities = 96/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623
|||||||| |||||||| || | ||||||||||| || ||||| |||||||| |||||
Sbjct 25329 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATGGC 25270
Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683
|| || || || |||||||| | || || |||||||| |||||| | ||| || ||
Sbjct 25269 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTC 25210
Query 33684 CGCC 33687
| ||
Sbjct 25209 CACC 25206
>seq514
Length=1022489
Score = 107 bits (118), Expect = 2e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387
|| ||||| || || ||||| |||||||| |||||||| ||||| || || | || ||
Sbjct 284463 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 284522
Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446
| ||| ||||| | ||| || ||||| || ||||| ||||||||||| |||||||||||
Sbjct 284523 AACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 284581
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745
|||||||||||||||| ||||| ||||||||||||||||| || || | || ||||
Sbjct 290249 CCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAA 290308
Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 33794
|||| || || |||||| | || || ||||| | | || ||| || ||
Sbjct 290309 AATACTTCTCCTCTGGTTTAAGCTTGTTCCAGTGAGGGAGATCCTTTGA 290357
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622453210657240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |