Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq19370 104 2e-17
seq29432 98.7 9e-16
seq17446 96.9 3e-15
seq42717 91.5 1e-13
seq273 82.4 7e-11
>seq19370
Length=533
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 26784 AAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAA 26843
||||| |||| || || | ||||| |||| | || | |||||||||||| |
Sbjct 1 AAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAAT 60
Query 26844 GTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTAC 26903
||||| || ||| ||||| ||||| || ||||| ||||| || || | || | |
Sbjct 61 GTCAAGGCCAAAATTCAAGACAAGGAAGGCATCCCTCCGGATCAGCAGAGGTTGATCTTC 120
Query 26904 GGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCT 26963
| ||| ||||| ||||| |||| | | | | |||||| || |||||||||||||||
Sbjct 121 GCCGGAAAACAGCTCGAGGATGGCCGTACCTTGGCCGACTACAATATTCAAAAAGAATCT 180
Query 26964 ACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| | || || || ||||| ||||| |||||
Sbjct 181 ACACTGCACCTTGTGCTGAGGCTTAGGGGAGG 212
>seq29432
Length=351
Score = 98.7 bits (108), Expect = 9e-16
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|| ||||| | || || ||||| |||| || || | |||||| |||| | || ||
Sbjct 341 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCC 282
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
||||||||||| | ||||| ||||| ||||||||||| || ||||| |||
Sbjct 281 TCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGAT 222
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTA 26944
|| || || | || | || || ||||| |||||||| | | || | || |||||
Sbjct 221 CAGCAGCGATTGATCTTCGCTGGAAAACAGCTCGAAGACGGGCG-TACTTTGGCTGACTA 163
Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
||||| || |||||||| || | ||||| || |||| || ||||||||
Sbjct 162 CAACATCCAGAAAGAATCCACGCTTCATCTTGTGTTGAGGCTCAGAGGAGG 112
>seq17446
Length=585
Score = 96.9 bits (106), Expect = 3e-15
Identities = 105/137 (77%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921
||||||||||| ||||| || |||||||| || || || | | ||| || ||||| |||
Sbjct 15 GACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGAAAGCAACTGGAA 74
Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|||| ||| | | ||| || || |||||||| ||||| |||||| | || || ||| |
Sbjct 75 GATGGCCGAACCCT-AGCGGATTACAACATTCAGAAAGAGTCTACTCTTCACCTCGTCTT 133
Query 26981 GAGACTTAGAGGAGGAA 26997
||| || ||||| ||||
Sbjct 134 GAGGCTCAGAGGTGGAA 150
>seq42717
Length=256
Score = 91.5 bits (100), Expect = 1e-13
Identities = 123/169 (73%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887
|||||||||||| | || ||| ||||| ||||| ||||| || ||||| |||||
Sbjct 12 CGACACCATCGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGATCA 71
Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946
|| || || || | || ||| |||||||| ||||||| | || | || ||||| |
Sbjct 72 GCAGAGGCTTATCTTCGCCGGAAAACAACTTGAAGATGGCCG-GACTTTGGCTGACTACA 130
Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|||||||||| || || ||| | ||||| || || || ||| | || ||
Sbjct 131 ACATTCAAAAGGAGTCGACTTTACATCTTGTTCTCAGGCTTCGTGGTGG 179
>seq273
Length=4066651
Score = 82.4 bits (90), Expect = 7e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827
|||||| | ||||| || || || || || || | |||||| | || | || | |
Sbjct 887416 AATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 887357
Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887
|||||||||||| | ||||| ||||| |||||||| || || || || || ||
Sbjct 887356 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCA 887297
Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947
|| || | || | | ||||||||| | ||||| | | | | | |||||| ||
Sbjct 887296 GCAGAGGTTGATCTTTGCCGGCAAACAGTTGGAAGACGGACGCACCCTGTCCGACTACAA 887237
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
||| || ||||| || ||| | || ||||||||| | | || |||||
Sbjct 887236 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTGCGCTTGAGGGGAGG 887189
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478282826700080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |