Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq19370 104 2e-17 seq29432 98.7 9e-16 seq17446 96.9 3e-15 seq42717 91.5 1e-13 seq273 82.4 7e-11 >seq19370 Length=533 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26784 AAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAA 26843 ||||| |||| || || | ||||| |||| | || | |||||||||||| | Sbjct 1 AAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAAT 60 Query 26844 GTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTAC 26903 ||||| || ||| ||||| ||||| || ||||| ||||| || || | || | | Sbjct 61 GTCAAGGCCAAAATTCAAGACAAGGAAGGCATCCCTCCGGATCAGCAGAGGTTGATCTTC 120 Query 26904 GGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCT 26963 | ||| ||||| ||||| |||| | | | | |||||| || ||||||||||||||| Sbjct 121 GCCGGAAAACAGCTCGAGGATGGCCGTACCTTGGCCGACTACAATATTCAAAAAGAATCT 180 Query 26964 ACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || | || || || ||||| ||||| ||||| Sbjct 181 ACACTGCACCTTGTGCTGAGGCTTAGGGGAGG 212 >seq29432 Length=351 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | |||||| |||| | || || Sbjct 341 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCC 282 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | ||||| ||||| ||||||||||| || ||||| ||| Sbjct 281 TCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGAT 222 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTA 26944 || || || | || | || || ||||| |||||||| | | || | || ||||| Sbjct 221 CAGCAGCGATTGATCTTCGCTGGAAAACAGCTCGAAGACGGGCG-TACTTTGGCTGACTA 163 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || |||||||| || | ||||| || |||| || |||||||| Sbjct 162 CAACATCCAGAAAGAATCCACGCTTCATCTTGTGTTGAGGCTCAGAGGAGG 112 >seq17446 Length=585 Score = 96.9 bits (106), Expect = 3e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| ||||| || |||||||| || || || | | ||| || ||||| ||| Sbjct 15 GACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGAAAGCAACTGGAA 74 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| ||| | | ||| || || |||||||| ||||| |||||| | || || ||| | Sbjct 75 GATGGCCGAACCCT-AGCGGATTACAACATTCAGAAAGAGTCTACTCTTCACCTCGTCTT 133 Query 26981 GAGACTTAGAGGAGGAA 26997 ||| || ||||| |||| Sbjct 134 GAGGCTCAGAGGTGGAA 150 >seq42717 Length=256 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | || ||| ||||| ||||| ||||| || ||||| ||||| Sbjct 12 CGACACCATCGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGATCA 71 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 || || || || | || ||| |||||||| ||||||| | || | || ||||| | Sbjct 72 GCAGAGGCTTATCTTCGCCGGAAAACAACTTGAAGATGGCCG-GACTTTGGCTGACTACA 130 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||| || || ||| | ||||| || || || ||| | || || Sbjct 131 ACATTCAAAAGGAGTCGACTTTACATCTTGTTCTCAGGCTTCGTGGTGG 179 >seq273 Length=4066651 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| || || || || || || | |||||| | || | || | | Sbjct 887416 AATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 887357 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | ||||| ||||| |||||||| || || || || || || Sbjct 887356 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGACCA 887297 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || | || | | ||||||||| | ||||| | | | | | |||||| || Sbjct 887296 GCAGAGGTTGATCTTTGCCGGCAAACAGTTGGAAGACGGACGCACCCTGTCCGACTACAA 887237 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || ||||| || ||| | || ||||||||| | | || ||||| Sbjct 887236 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTGCGCTTGAGGGGAGG 887189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478282826700080