Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq7730 206 7e-48 seq782 113 1e-19 seq93 96.9 9e-15 seq3 87.8 5e-12 >seq7730 Length=1237 Score = 206 bits (228), Expect = 7e-48 Identities = 360/513 (70%), Gaps = 8/513 (2%) Strand=Plus/Plus Query 111313 ATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGT 111372 ||||||||||||| || |||||| || || |||| || |||| || |||||||| | Sbjct 320 ATTTTCCACTTCTGACGACAAAGAGAGTATTCTGGAGAGGTGTTGTTGAGGAACTTCTTT 379 Query 111373 GGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGG 111432 |||| || |||| || |||||||| |||| || ||| | | | || |||| Sbjct 380 GGTTCATAAGCGGTTCAACCAATGCAAAGTTACTTCAAGAAAAGGGTATCCATATATGGG 439 Query 111433 ATGGAAATGGATCACGTGACTT-TCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGT 111491 |||| |||| ||| | |||| ||| ||| |||| || || | ||||||||| Sbjct 440 ATGGGAATGCGTCAAGA-ACTTATCTTGATGGTATTGGACTGACTGAGAGAGAAGAAGGT 498 Query 111492 GATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATG 111551 || || ||||| ||||| |||||||||||| | ||||||||||| | |||| | ||| Sbjct 499 GACCTTGGACCCGTTTATGGATTTCAATGGAGACACTTTGGTGCTAAGTACACAGATATG 558 Query 111552 CACGACTCAT-ATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAA 111610 || | || || || | || ||| |||||| | | |||| ||| | | || || Sbjct 559 CATG-CTGATTATACTGGCCAAGGATTTGATCAGCTCTCGGATGTAATTAACAAGATCAA 617 Query 111611 GAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAA 111670 |||||| || | ||| || || || ||| || ||||| || || | | Sbjct 618 GAACAATCCTGATGATCGACGGATAATAATGTCGGCTTGGAATCCTTCTGACCTTAAGTT 677 Query 111671 AATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATG-TACACGACGGGATGCTT 111728 ||||||||||| ||||| || | | | ||| |||||||||| |||| | || |||| Sbjct 678 GATGGCACTTCCTCCATGCCA-CATGTTTGCGCAGTTTTATGTTACA-AATGGAGAGCTT 735 Query 111729 TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCA 111788 || || |||||||||||||| || || ||||| ||||||||||| |||||||| ||||| Sbjct 736 TCGTGTCAAATGTATCAGCGCTCAGCCGATATGGGTCTTGGTGTACCGTTTAACATTGCC 795 Query 111789 AGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||| | || ||||| ||| | |||||||| Sbjct 796 TCATACTCCCTTCTTACATGCATCCTCGCTCAT 828 >seq782 Length=486663 Score = 113 bits (124), Expect = 1e-19 Identities = 272/411 (66%), Gaps = 12/411 (3%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||| || ||||| ||||| |||||||| ||||| || |||| | | ||||| Sbjct 446312 GCCCCGATGCCTACTGCTTCAACTGCTCAGATCCTGGGAAATAATGAGTCCATTGAACCA 446371 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | ||| ||||| | || | ||| | || | || |||||||||| | | || ||| Sbjct 446372 TGTACCAGCAACATCTACACTCGCAGAGTCTTGTCAGGAGAATTTCAGATTGTAAATCCT 446431 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 || || | || ||||| || | || ||||| ||| ||||| || | || Sbjct 446432 CACTTACTGAAAGATCTGATTGAGCAGGGCTTGTGGAATGAAGAGATGAAAAATCAGATT 446491 Query 364930 ATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATT 364989 || || ||||| ||| | |||| ||| ||| | |||| || || |||||| || Sbjct 446492 ATTGCATGCAATGGCTCTATCCAGAGCATATCAGAAATTCCTGATGACTTGAAGCAACTT 446551 Query 364990 TACAAAACCGTATGGGAAATTTCCATGCGAAC---TCTCATTGATATGGCGGCCGATCGC 365046 || || || ||||||||||| || | ||| ||||| | ||||| || || | Sbjct 446552 TATAAGACTGTATGGGAAATCTCTCAGAAAACCATTCTCA---AGATGGCAGCTGAGAGA 446608 Query 365047 GGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCC 365106 |||||||| || ||| |||||||| | ||| | ||| || | || | | Sbjct 446609 GGTGCTTTCATTGATCAAAGCCAGTCTCTGAACATCCACATTGCT------AACTATGGC 446662 Query 365107 AAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGT 365157 || || || ||||| |||||||| ||||| ||| | ||||| ||| Sbjct 446663 AAACTCACTAGTATGCACTTCTACGGCTGGAAGCAGGGTTTAAAGACTGGT 446713 >seq93 Length=2374459 Score = 96.9 bits (106), Expect = 9e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || ||||||| |||||||| || || || ||| Sbjct 51335 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCGCAGACAGAGACAGGTACCCCATACATG 51276 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 | ||||||||||| || ||||| || |||||||||| |||| || || || Sbjct 51275 CTCTACAAAGATTCCTGTAACCGGAAAAGCAACCAGCAGAACCTGGGAACGAT 51223 >seq3 Length=9954913 Score = 87.8 bits (96), Expect = 5e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| || | || ||||| | || ||||| || ||||||||||| | ||| || Sbjct 27098 GAACGTGTTGTAGCTTTTGCCGCAGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCA 27157 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || || ||||| || ||||| | | | ||||| || || || ||||| ||||| | ||| Sbjct 27158 ATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATT 27217 Query 22609 AGCCGAGATGAGG 22621 ||| ||||||||| Sbjct 27218 AGCAGAGATGAGG 27230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302294218309298