Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq19370 113 4e-20 seq29432 107 2e-18 seq17446 104 2e-17 seq21504 89.7 4e-13 seq10281 89.7 4e-13 seq19201 86.0 5e-12 seq42717 82.4 7e-11 >seq19370 Length=533 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24006 AAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAA 24065 ||||| |||| || || | || || |||| |||||| || |||||||||||| | Sbjct 1 AAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAAT 60 Query 24066 GTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTAC 24125 ||||| || ||| ||||| |||||||| ||||| ||||| ||||| |||| | | Sbjct 61 GTCAAGGCCAAAATTCAAGACAAGGAAGGCATCCCTCCGGATCAGCAGAGGTTGATCTTC 120 Query 24126 GGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCT 24185 | ||| || || ||||| |||| | | | | | ||| || || ||||||||||||||| Sbjct 121 GCCGGAAAACAGCTCGAGGATGGCCGTACCTTGGCCGACTACAATATTCAAAAAGAATCT 180 Query 24186 ACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| | || | ||| | || | || ||||| Sbjct 181 ACACTGCACCTTGTGCTGAGGCTTAGGGGAGG 212 >seq29432 Length=351 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | || ||| |||| |||||| || Sbjct 341 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCC 282 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||||||||| | ||||| ||||| ||||||||||| || ||||| ||| Sbjct 281 TCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGAT 222 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTA 24166 || ||| || |||| | || || || || |||||||| | | || | || || || Sbjct 221 CAGCAGCGATTGATCTTCGCTGGAAAACAGCTCGAAGACGGGCG-TACTTTGGCTGACTA 163 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || |||||||| || ||||| | ||||| || | |||||||| Sbjct 162 CAACATCCAGAAAGAATCCACGCTTCATCTTGTGTTGAGGCTCAGAGGAGG 112 >seq17446 Length=585 Score = 104 bits (114), Expect = 2e-17 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||||||||| ||||| || ||||||||||| ||||| | | ||| |||||||| ||| Sbjct 15 GACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGAAAGCAACTGGAA 74 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| | ||| | | ||| ||||| |||||||| ||||| ||||| |||| | || || Sbjct 75 GATGGCCGAACCCT-AGCGGATTACAACATTCAGAAAGAGTCTACTCTTCACCTCGTCTT 133 Query 24203 AAGATTGAGAGGAGGA 24218 || | ||||| ||| Sbjct 134 GAGGCTCAGAGGTGGA 149 >seq21504 Length=484 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||| | || ||||| |||| ||| |||| || ||| | | Sbjct 15 ATGCAGATCTTCGTCAAGACACTCACCGGAAAGACGATCACCCTCGAGGTGGAGAGCTCC 74 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || ||| ||||| ||||| |||||||| || || || || Sbjct 75 GACACTATCGACAACGTGAAAACCAAGATACAGGACAAGGAAGGCATCCCACCGGACCAG 134 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || | || | || ||| |||||||||||||||| ||| | || || ||| Sbjct 135 CAAAGGTTAATCTTCGCCGGAAAGCAACTCGAAGATGGACGAACTCTTGCTGACTACAAC 194 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || || ||||| || ||| |||| || || || Sbjct 195 ATCCAGAAAGAGTCAACACTTCACTTGGTCTT 226 >seq10281 Length=966 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || || || || ||||||| | || || ||| | Sbjct 491 ATGCAAATCTTTGTTAAAACCTTGACGGGGAAGACGATTACTTTGGAGGTGGAGAGCTCT 550 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | || ||| || || |||||||||||||| || || ||||| Sbjct 551 GATACCATCGACAACGTGAAAGCCAAAATCCAAGACAAAGAAGGCATCCCACCGGATCAG 610 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 |||||| |||| | | || ||||| |||||||| | | | || | || || || || Sbjct 611 CAGAGATTGATCTTTGCAGGAAAGCAGCTCGAAGACGGCCG-GACTTTGGCTGACTACAA 669 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||| || || || ||||| |||| || || || Sbjct 670 CATCCAGAAGGAGTCTACGCTTCACTTGGTCTT 702 >seq19201 Length=536 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 || ||||||||| | ||||| ||||| |||| || || |||| ||| | || || || Sbjct 512 AAGCAAAATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGA 453 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | |||||| ||||| | || || ||||| ||||| ||||| || || || Sbjct 452 ATCGTCCGACACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAAGGAATCCCACC 393 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 ||||| ||| | ||||| | || || ||||| || ||||| | || | || || Sbjct 392 GGATCAGCAGCGGCTGATATTCGCGGGGAAGCAGCTGGAAGACGGAAGGACACTCGCGGA 333 Query 24164 TTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| ||||| || || || || || |||| || || | | ||||||||||| Sbjct 332 TTACAACATCCAGAAGGAGTCGACGCTTCACTTGGTTCTCCGTCTGAGAGGAGGA 278 >seq42717 Length=256 Score = 82.4 bits (90), Expect = 7e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | || ||| ||||| ||||| |||||||| ||||| ||||| Sbjct 12 CGACACCATCGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGATCA 71 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 ||||| || || | || ||| || ||||| ||||||| | | || | || || || | Sbjct 72 GCAGAGGCTTATCTTCGCCGGAAAACAACTTGAAGATGGCCG-GACTTTGGCTGACTACA 130 Query 24169 ACATTCAAAAAGAATCTAC 24187 |||||||||| || || || Sbjct 131 ACATTCAAAAGGAGTCGAC 149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429603589473045