Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq19370 113 4e-20
seq29432 107 2e-18
seq17446 104 2e-17
seq21504 89.7 4e-13
seq10281 89.7 4e-13
seq19201 86.0 5e-12
seq42717 82.4 7e-11
>seq19370
Length=533
Score = 113 bits (124), Expect = 4e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24006 AAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAA 24065
||||| |||| || || | || || |||| |||||| || |||||||||||| |
Sbjct 1 AAAACCCTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAAT 60
Query 24066 GTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTAC 24125
||||| || ||| ||||| |||||||| ||||| ||||| ||||| |||| | |
Sbjct 61 GTCAAGGCCAAAATTCAAGACAAGGAAGGCATCCCTCCGGATCAGCAGAGGTTGATCTTC 120
Query 24126 GGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCT 24185
| ||| || || ||||| |||| | | | | | ||| || || |||||||||||||||
Sbjct 121 GCCGGAAAACAGCTCGAGGATGGCCGTACCTTGGCCGACTACAATATTCAAAAAGAATCT 180
Query 24186 ACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
||| | || | ||| | || | || |||||
Sbjct 181 ACACTGCACCTTGTGCTGAGGCTTAGGGGAGG 212
>seq29432
Length=351
Score = 107 bits (118), Expect = 2e-18
Identities = 164/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|| ||||| | || || ||||| |||| || || | || ||| |||| |||||| ||
Sbjct 341 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCC 282
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
||||||||||| | ||||| ||||| ||||||||||| || ||||| |||
Sbjct 281 TCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGAT 222
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTA 24166
|| ||| || |||| | || || || || |||||||| | | || | || || ||
Sbjct 221 CAGCAGCGATTGATCTTCGCTGGAAAACAGCTCGAAGACGGGCG-TACTTTGGCTGACTA 163
Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
||||| || |||||||| || ||||| | ||||| || | ||||||||
Sbjct 162 CAACATCCAGAAAGAATCCACGCTTCATCTTGTGTTGAGGCTCAGAGGAGG 112
>seq17446
Length=585
Score = 104 bits (114), Expect = 2e-17
Identities = 106/136 (78%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143
||||||||||| ||||| || ||||||||||| ||||| | | ||| |||||||| |||
Sbjct 15 GACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGAAAGCAACTGGAA 74
Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202
|||| | ||| | | ||| ||||| |||||||| ||||| ||||| |||| | || ||
Sbjct 75 GATGGCCGAACCCT-AGCGGATTACAACATTCAGAAAGAGTCTACTCTTCACCTCGTCTT 133
Query 24203 AAGATTGAGAGGAGGA 24218
|| | ||||| |||
Sbjct 134 GAGGCTCAGAGGTGGA 149
>seq21504
Length=484
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || ||| | || ||||| |||| ||| |||| || ||| | |
Sbjct 15 ATGCAGATCTTCGTCAAGACACTCACCGGAAAGACGATCACCCTCGAGGTGGAGAGCTCC 74
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| ||||| | || ||| ||||| ||||| |||||||| || || || ||
Sbjct 75 GACACTATCGACAACGTGAAAACCAAGATACAGGACAAGGAAGGCATCCCACCGGACCAG 134
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| || | || | || ||| |||||||||||||||| ||| | || || |||
Sbjct 135 CAAAGGTTAATCTTCGCCGGAAAGCAACTCGAAGATGGACGAACTCTTGCTGACTACAAC 194
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202
|| || ||||| || ||| |||| || || ||
Sbjct 195 ATCCAGAAAGAGTCAACACTTCACTTGGTCTT 226
>seq10281
Length=966
Score = 89.7 bits (98), Expect = 4e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| ||||| || || || || ||||||| | || || ||| |
Sbjct 491 ATGCAAATCTTTGTTAAAACCTTGACGGGGAAGACGATTACTTTGGAGGTGGAGAGCTCT 550
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| |||||||| | || ||| || || |||||||||||||| || || |||||
Sbjct 551 GATACCATCGACAACGTGAAAGCCAAAATCCAAGACAAAGAAGGCATCCCACCGGATCAG 610
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169
|||||| |||| | | || ||||| |||||||| | | | || | || || || ||
Sbjct 611 CAGAGATTGATCTTTGCAGGAAAGCAGCTCGAAGACGGCCG-GACTTTGGCTGACTACAA 669
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202
||| || || || ||||| |||| || || ||
Sbjct 670 CATCCAGAAGGAGTCTACGCTTCACTTGGTCTT 702
>seq19201
Length=536
Score = 86.0 bits (94), Expect = 5e-12
Identities = 160/235 (68%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043
|| ||||||||| | ||||| ||||| |||| || || |||| ||| | || || ||
Sbjct 512 AAGCAAAATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTTGA 453
Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103
| |||||| ||||| | || || ||||| ||||| ||||| || || ||
Sbjct 452 ATCGTCCGACACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAAGGAATCCCACC 393
Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163
||||| ||| | ||||| | || || ||||| || ||||| | || | || ||
Sbjct 392 GGATCAGCAGCGGCTGATATTCGCGGGGAAGCAGCTGGAAGACGGAAGGACACTCGCGGA 333
Query 24164 TTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218
||| ||||| || || || || || |||| || || | | |||||||||||
Sbjct 332 TTACAACATCCAGAAGGAGTCGACGCTTCACTTGGTTCTCCGTCTGAGAGGAGGA 278
>seq42717
Length=256
Score = 82.4 bits (90), Expect = 7e-11
Identities = 103/139 (74%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
|||||||||||| | || ||| ||||| ||||| |||||||| ||||| |||||
Sbjct 12 CGACACCATCGACAATGTTAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGATCA 71
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168
||||| || || | || ||| || ||||| ||||||| | | || | || || || |
Sbjct 72 GCAGAGGCTTATCTTCGCCGGAAAACAACTTGAAGATGGCCG-GACTTTGGCTGACTACA 130
Query 24169 ACATTCAAAAAGAATCTAC 24187
|||||||||| || || ||
Sbjct 131 ACATTCAAAAGGAGTCGAC 149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429603589473045
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |