Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq683 91.5 1e-13 seq475 91.5 1e-13 >seq683 Length=758919 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||| || ||||| || ||||| || |||| || |||| Sbjct 117351 ATGCAGATCTTTGTGAAAACCCTGACGGGCAAGACCATCACACTCGAGGTCAAGCCCAGT 117292 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||||| ||| | | || ||| ||||| || || || ||| |||| ||| ||| Sbjct 117291 GACACTATTGAAAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 117232 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || |||| |||||||||||| | || |||| | || | | || |||||| Sbjct 117231 CAGCATCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTATAAC 117172 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 || || |||||||| ||| | || ||||| Sbjct 117171 ATCCAGAAAGAGTCCACTCTGCACTTGGTG 117142 >seq475 Length=1570329 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||||||||| || || || || || || || ||||| ||| | || |||| || Sbjct 1255877 AAAATGCAAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 1255936 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||||||| ||| | || || || || ||||| || ||| ||||| ||| Sbjct 1255937 AGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGAC 1255996 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || || || | ||||||||| || | ||||||| | || | | || || Sbjct 1255997 CAGCAGAGGCTCATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTAC 1256056 Query 115463 AACATTCAAAAAGAGTCTAC 115482 ||||| || |||||||| || Sbjct 1256057 AACATCCAGAAAGAGTCGAC 1256076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425015139836680