Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq29432 132 5e-26 seq10281 132 5e-26 seq21504 113 4e-20 seq25626 109 5e-19 seq58060 105 6e-18 seq48301 105 6e-18 seq19370 100 3e-16 seq19201 98.7 9e-16 seq475 98.7 9e-16 seq93 91.5 1e-13 seq61295 84.2 2e-11 seq45643 84.2 2e-11 >seq29432 Length=351 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 || ||| | ||| | || || || || || |||||||| || || || ||| ||| Sbjct 126 CAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCCAAAGTACGCCCGTC 185 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 || ||||| || || ||| |||| || |||||||| ||||||||||||||||||||||| Sbjct 186 TTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAGGGATTCCTTCTTTGTC 245 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||| || ||||| | || | || || | |||||||| |||| ||| | ||| Sbjct 246 TTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGT 305 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || |||||||| ||||| ||||| |||||||| Sbjct 306 CTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 338 >seq10281 Length=966 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | ||||||||| || || |||||||| || | Sbjct 945 CCACCACGTAGACGAAGAACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCC 886 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| |||||||| || ||| |||| | ||||||||||||||| ||| Sbjct 885 AATGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 826 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||||| | || | |||||| | ||||| Sbjct 825 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTGTCGATAGTATCAGAACTCTCGACC 766 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || || || ||||| ||||||||| Sbjct 765 TCCAGAGTGATGGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCATG 718 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 ||||| | ||| | ||||||||||| || |||||||| || | || || ||| Sbjct 474 AGCACGAGATGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCGGCCATCC 415 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || |||||||| || || |||| || | ||||||||||| || || || || || || Sbjct 414 TCGAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGTATACCCTCCTTATCT 355 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||||| ||||| | || || || |||| | ||||| |||| ||| | || Sbjct 354 TGAATTTTAGCCTTGACGTTGTCGACGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTC 295 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| ||||| ||||| |||||||| Sbjct 294 TTCCCCGTTAGGGTTTTGACGAAGATCTGCAT 263 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||||| || || || | || |||||||| || |||||||| || Sbjct 718 GCCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGC 659 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || ||| || |||||||| ||||| |||| || | |||||| ||||| || Sbjct 658 CAAAGTCCGGCCGTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGG 599 Query 131127 GATTCCTTCTTTGTCGGTGATTTT 131150 ||| ||||||||||| |||||| Sbjct 598 GATGCCTTCTTTGTCTTGGATTTT 575 >seq21504 Length=484 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | |||||| ||||| || |||||||| ||| | Sbjct 469 CCACCACGGAGACGAAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCC 410 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | ||||||||||||||| ||| Sbjct 409 AAAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 350 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| ||| || || | | || | || || | | ||| | Sbjct 349 ATGCCCTCCTTGTC-CTGAATTTTGGCTTTCACGTTATCAATGGTGTCAGAGCTCTCCAC 291 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | || || || || || || || ||||| || |||||| Sbjct 290 TTCGAGGGTGATAGTCTTGCCTGTAAGGGTCTTGACGAAGATTTGCATG 242 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||||| || || || | || ||||| || || |||||||| || Sbjct 242 GCCACCACGGAGACGCAAGACCAAGTGAAGTGTTGACTCTTTCTGGATGTTGTAGTCAGC 183 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || || || || ||||| || ||| ||||||| | ||||||||||| || Sbjct 182 AAGAGTTCGTCCATCTTCGAGTTGCTTTCCGGCGAAGATTAACCTTTGCTGGTCCGGTGG 123 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| || || || | | || | ||| |||| | ||| | Sbjct 122 GATGCCTTCCTTGTCCTGTATCTTGGTTTTCACGTTGTCGATAGTGTCGGAGCTCTCCAC 63 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || ||||| || || || ||||| |||||||| Sbjct 62 CTCGAGGGTGATCGTCTTTCCGGTGAGTGTCTTGACGAAGATCTGCAT 15 >seq25626 Length=405 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | | || || | ||||| ||||||||||| ||||||||||| ||| Sbjct 357 GCCACCACGAAGCCTGAGAACAAGATGTAAAGTCGACTCCTTCTGAATGTTGTAGTCGGC 298 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| ||| || |||||||| || ||| |||| || | ||||||||||||||| Sbjct 297 TAAGGTGCGGCCGTCTTCAAGCTGCTTCCCGGCGAAGATCAATCTCTGCTGGTCCGGAGG 238 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| || || ||||| | || | || || | | ||| | Sbjct 237 AATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTATCAATGGTGTCTGAGCTCTCAAC 178 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || ||||| ||||| || || || |||||||| Sbjct 177 CTCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCACAAAGATCTGCAT 130 Score = 82.4 bits (90), Expect = 7e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTC 131081 || || | ||||| |||||||| ||||| |||||||| || || ||| | || ||| Sbjct 113 AGAACAAGATGTAAAGTCGACTCTTTTTGGATGTTGTAGTCAGCCAATGTTCTGCC-GTC 55 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTC 131135 || |||||||| || ||| |||| || | ||||||||||||||| || ||||| Sbjct 54 TTCAAGCTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGAGGAATACCTTC 1 >seq58060 Length=210 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| || | | || || || || | ||||||||| || ||||||||||| || Sbjct 196 AGCCACCACGGAGCCTGAGAACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCAG 137 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || ||||| |||||| |||||||| || ||| |||| | ||||||||||||||| | Sbjct 136 CCAAAGTGCGACCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGTG 77 Query 131126 GGATTCCTTCTTTGTC 131141 |||| ||||| ||||| Sbjct 76 GGATGCCTTCCTTGTC 61 >seq48301 Length=236 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | |||||||||||| || |||||||| || | Sbjct 218 CCACCACGAAGACGAAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 159 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| |||||||| || ||| |||| | ||| ||||||||||| || Sbjct 158 AATGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCCGGGGGA 99 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || |||| | || | |||||||| | ||| | Sbjct 98 ATACCTTCCTTGTCCTGGATCTTAGCTTTGACGTTGTCAATAGTATCGGAGCTCTCCACC 39 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAA 131225 || | || | ||| || ||||| | || || ||||| Sbjct 38 TCAAGAGTGATGGTCTTCCCGGTCAATGTCTTAACGAA 1 >seq19370 Length=533 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 |||||| | || | || || || |||||||| ||||| ||| || ||| || || Sbjct 198 CAGCACAAGGTGCAGTGTAGATTCTTTTTGAATATTGTAGTCGGCCAAGGTACGGCCATC 139 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| ||||| || || ||| |||| || | |||||| ||||||||||| ||||| ||||| Sbjct 138 CTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGGATGCCTTCCTTGTC 79 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||||| ||||| | || | || ||| || ||||| |||| || | ||| Sbjct 78 TTGAATTTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGT 19 Query 131202 TTTACCGGTTAGAGTTTT 131219 || |||||||| ||||| Sbjct 18 CTTGCCGGTTAGGGTTTT 1 >seq19201 Length=536 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| || || || || | ||||||||||| || ||||||||||| Sbjct 279 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 338 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||| || |||||||| || ||| | || | |||||||| ||||| ||| Sbjct 339 AGTGTCCTTCCGTCTTCCAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGGG 398 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| ||| ||| | | || | || |||| || || | Sbjct 399 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGATTCAACC 458 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || ||||| ||||| || || |||||||| Sbjct 459 TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT 505 >seq475 Length=1570329 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || |||||| || | || | ||||||||| || || |||||||| || Sbjct 1256108 AGCCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAG 1256049 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| || || ||||||||||| || |||| | | ||||||||| || | Sbjct 1256048 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGG 1255989 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || || || || ||| || ||| | | ||| | || ||| ||| ||| | Sbjct 1255988 GGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCA 1255929 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || |||||||| ||||| Sbjct 1255928 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCAT 1255880 >seq93 Length=2374459 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 145675 TACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTT 145734 ||| || || | ||||| |||||| |||||||| |||||||| || ||||| || ||||| Sbjct 51192 TACTATTTCTGTGCACAGATTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTTGCTTTT 51251 Query 145735 CCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCAC 145794 || ||| || | || |||||||||||||| || || ||||| ||||| ||| | Sbjct 51252 CCGGTTACAGGAATCTTTGTAGAGCATGTATGGGGTACCTGTCTCTGTCTGCGACTCAAT 51311 Query 145795 GAT 145797 ||| Sbjct 51312 GAT 51314 >seq61295 Length=203 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 ||| || |||||||| || ||| |||| || | ||||||||||||||| || || || || Sbjct 192 GTCTTCAAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCCTT 133 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || ||||| | || | || |||| | ||| | || | |||| Sbjct 132 GTCCTGGATCTTGGCCTTGACGTTATCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAAT 73 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || ||||| ||||| || || || |||||||| Sbjct 72 GGTCTTTCCGGTGAGAGTCTTCACAAAGATCTGCAT 37 >seq45643 Length=245 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 ||||||| | ||| || | ||| |||||| | || ||||| ||||| |||||||||| Sbjct 108 TGTATTGAATGATTTCAGTGCATAAATTGGATGACTTTATGGTACCCAGGTTTTGCTGAT 49 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768 | ||||| |||||||| | |||||| | |||||||| ||| Sbjct 48 TGCTTTTGCTGTTGCATGAATCCTTGAAAAGCATGTATGGT 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471638499749760