Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq273 123 2e-23
seq475 105 5e-18
seq55541 98.7 8e-16
seq683 96.9 3e-15
seq10281 91.5 1e-13
seq29432 89.7 4e-13
seq19370 86.0 5e-12
seq40511 84.2 2e-11
seq19201 84.2 2e-11
>seq273
Length=4066651
Score = 123 bits (136), Expect = 2e-23
Identities = 158/216 (73%), Gaps = 4/216 (2%)
Strand=Plus/Plus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| |||| ||||| |||||||| || || ||||||||||||| || ||| ||||
Sbjct 887203 CAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTC 887262
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
||||| |||||||| ||| | || | || ||| ||||| || | ||||||||||||
Sbjct 887263 TTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTC 887322
Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| || || ||| || | | | ||||| | ||||||| |||| |||||||
Sbjct 887323 TTGGATCTTGGC--CTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 887380
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|| || ||||||| || || ||||| |||||||||
Sbjct 887381 GTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 887416
>seq475
Length=1570329
Score = 105 bits (116), Expect = 5e-18
Identities = 156/219 (71%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| |||| ||||| || ||||| || || ||||||||||| | | || | | ||
Sbjct 1256092 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 1256033
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|||| || ||||||||| | || |||| ||| ||||| || | |||||| || ||
Sbjct 1256032 TTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC 1255973
Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| || || |||||| | | | ||||||| ||||||| |||| |||||||
Sbjct 1255972 CTGGATCTTGGC--CTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 1255915
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|| || || ||||| || || || ||||| |||||||||
Sbjct 1255914 GTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTTG 1255876
>seq55541
Length=216
Score = 98.7 bits (108), Expect = 8e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || ||||| || || | ||| || || ||||||||||||||||||||||| ||
Sbjct 162 CCTCCACGGAGCCTGAGAACGAGATGAAGGGTCGACTCCTTTTGTATGTTGTAGTCAGCG 103
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | ||||||| | ||| || || ||| | || | || |||||||||| |||
Sbjct 102 AGAGTTCGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGTTGGTCCGGAGGA 43
Query 16829 ACGCCCTCTTTGTC 16842
| ||||| |||||
Sbjct 42 ATTCCCTCCTTGTC 29
>seq683
Length=758919
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||| |||||||| || || ||||| ||||| | | || | | |||
Sbjct 117140 AGCACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGAGAGAGTGCGGCCATCC 117199
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| |||||||||||| |||| || |||| ||||| || | |||||| |||||
Sbjct 117200 TCCAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 117259
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || ||| || || | | | |||||| | ||||| || | |||||||
Sbjct 117260 TGGATTTTGGCT--TTGACATTTTCAATAGTGTCACTGGGCTTGACCTCGAGTGTGATGG 117317
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || || ||||| ||||| ||||| ||||||||
Sbjct 117318 TCTTGCCCGTCAGGGTTTTCACAAAGATCTGCAT 117351
>seq10281
Length=966
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/233 (69%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || ||||| || |||| || ||||||||||| || || |||||||||||||||
Sbjct 261 CCACCACGGAGCCTGAGGACCAAGTGGAGCGTGGACTCTTTCTGGATGTTGTAGTCGGCC 202
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | |||| || | |||||||| || | ||||||| ||| |||||| ||
Sbjct 201 AAAGTTCGGCCGTCTTCGAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGG 142
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||| || || || || || || || || | | | | ||||| | |||
Sbjct 141 ATGCCTTCCTTATCCTGGATCTTGACT--TTAACGTTGTCGATGGTGTCAGAGCTTTCCA 84
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|| | |||||| || |||||||| || || || | || ||||||| |||
Sbjct 83 CCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTAATGAAGGTCTGCATCTTG 31
Score = 82.4 bits (90), Expect = 6e-11
Identities = 157/230 (68%), Gaps = 1/230 (0%)
Strand=Plus/Minus
Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765
||||| || || ||||| || || | ||| || || |||||||| || |||||||||||
Sbjct 491 TACCC-CCACGAAGCCTGAGCACGAGATGAAGTGTCGACTCCTTCTGGATGTTGTAGTCA 433
Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825
|| | || | | ||||| | || || || ||| | || | || || ||||||
Sbjct 432 GCAAGAGTCCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGT 373
Query 16826 GGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885
|| | ||||| || || ||||| ||| || | | | || |||||| | |||
Sbjct 372 GGTATACCCTCCTTATCTTGAATTTTAGCCTTGACGTTGTCGACGGTGTCGGAGCTCTCG 313
Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | |||||| || || || || || |||||||| || ||||||||
Sbjct 312 ACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCAT 263
>seq29432
Length=351
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/232 (69%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||||| ||||||| || | ||| |||||||| || || || ||||||||||| |||
Sbjct 112 CCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCC 171
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || |||| || | ||||| || || | || | ||||| || ||| |||
Sbjct 172 AAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAGGG 231
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| || |||||||| || || || ||| || | | | | ||||| || |||
Sbjct 232 ATTCCTTCTTTGTCTTGGATCTTGGC--CTTGACATTGTCGATGGTGTCAGAGGACTCGA 289
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938
|| | ||||||||| || ||||| || ||||| || || |||||||| ||
Sbjct 290 CCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 341
>seq19370
Length=533
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| | |||||||| || | ||||| || || || ||||| || ||||||||||||
Sbjct 212 CCTCCCCTAAGCCTCAGCACAAGGTGCAGTGTAGATTCTTTTTGAATATTGTAGTCGGCC 153
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | ||||| | ||||| || || | || | || ||| || ||| |||
Sbjct 152 AAGGTACGGCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGG 93
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||| || ||||| ||||| ||| || | | | | ||||||| | |||
Sbjct 92 ATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACC 33
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTT 16920
|| | |||||||| || ||||| || |||||
Sbjct 32 TCGAGAGTGATGGTCTTGCCGGTTAGGGTTTT 1
>seq40511
Length=266
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || ||||| || || | ||| || || |||||||| || ||||||||||| ||
Sbjct 212 CCTCCACGGAGCCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCG 153
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | ||||||| | ||| || || || |||| |||| ||| |||||| ||
Sbjct 152 AGAGTTCGGCCGTCCTCGAGTTGCTTTCCGGCGAAAATCAGCCTCTGCTGGTCCGGTGGG 93
Query 16829 ACGCCCTCTTTGTC 16842
| ||||| |||||
Sbjct 92 ATTCCCTCCTTGTC 79
>seq19201
Length=536
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||||| || | || |||| || ||||| |||||||| || |||||||| || ||
Sbjct 279 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 338
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | |||| |||| || || ||||| | || |||||||| || ||| ||
Sbjct 339 AGTGTCCTTCCGTCTTCCAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGGG 398
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| || || ||||| || | | |||||| | | | | |||||| | ||
Sbjct 399 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGATTCAACC 458
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|| | ||| || || || || || || ||||| ||||| ||||||||||||
Sbjct 459 TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTG 509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404774801022610
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