Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq273 123 2e-23 seq475 105 5e-18 seq55541 98.7 8e-16 seq683 96.9 3e-15 seq10281 91.5 1e-13 seq29432 89.7 4e-13 seq19370 86.0 5e-12 seq40511 84.2 2e-11 seq19201 84.2 2e-11 >seq273 Length=4066651 Score = 123 bits (136), Expect = 2e-23 Identities = 158/216 (73%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| |||||||| || || ||||||||||||| || ||| |||| Sbjct 887203 CAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTC 887262 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| |||||||| ||| | || | || ||| ||||| || | |||||||||||| Sbjct 887263 TTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTC 887322 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||| | ||||||| |||| ||||||| Sbjct 887323 TTGGATCTTGGC--CTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 887380 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || ||||||| || || ||||| ||||||||| Sbjct 887381 GTCTTACCGGTCAAGGTCTTCACAAAGATCTGCATT 887416 >seq475 Length=1570329 Score = 105 bits (116), Expect = 5e-18 Identities = 156/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| || ||||| || || ||||||||||| | | || | | || Sbjct 1256092 CAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 1256033 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||||||| | || |||| ||| ||||| || | |||||| || || Sbjct 1256032 TTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC 1255973 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||||| ||||||| |||| ||||||| Sbjct 1255972 CTGGATCTTGGC--CTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 1255915 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || ||||| || || || ||||| ||||||||| Sbjct 1255914 GTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTTG 1255876 >seq55541 Length=216 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || ||||| || || | ||| || || ||||||||||||||||||||||| || Sbjct 162 CCTCCACGGAGCCTGAGAACGAGATGAAGGGTCGACTCCTTTTGTATGTTGTAGTCAGCG 103 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | ||| || || ||| | || | || |||||||||| ||| Sbjct 102 AGAGTTCGGCCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGTTGGTCCGGAGGA 43 Query 16829 ACGCCCTCTTTGTC 16842 | ||||| ||||| Sbjct 42 ATTCCCTCCTTGTC 29 >seq683 Length=758919 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| |||||||| || || ||||| ||||| | | || | | ||| Sbjct 117140 AGCACCAAGTGCAGAGTGGACTCTTTCTGGATGTTATAGTCTGAGAGAGTGCGGCCATCC 117199 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| |||||||||||| |||| || |||| ||||| || | |||||| ||||| Sbjct 117200 TCCAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 117259 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | |||||| | ||||| || | ||||||| Sbjct 117260 TGGATTTTGGCT--TTGACATTTTCAATAGTGTCACTGGGCTTGACCTCGAGTGTGATGG 117317 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| ||||| ||||| |||||||| Sbjct 117318 TCTTGCCCGTCAGGGTTTTCACAAAGATCTGCAT 117351 >seq10281 Length=966 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || |||| || ||||||||||| || || ||||||||||||||| Sbjct 261 CCACCACGGAGCCTGAGGACCAAGTGGAGCGTGGACTCTTTCTGGATGTTGTAGTCGGCC 202 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| || | |||||||| || | ||||||| ||| |||||| || Sbjct 201 AAAGTTCGGCCGTCTTCGAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGCGGG 142 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || || || || || || || || | | | | ||||| | ||| Sbjct 141 ATGCCTTCCTTATCCTGGATCTTGACT--TTAACGTTGTCGATGGTGTCAGAGCTTTCCA 84 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | |||||| || |||||||| || || || | || ||||||| ||| Sbjct 83 CCTCGAGGGTGATTGTCTTTCCGGTGAGAGTCTTAATGAAGGTCTGCATCTTG 31 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/230 (68%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765 ||||| || || ||||| || || | ||| || || |||||||| || ||||||||||| Sbjct 491 TACCC-CCACGAAGCCTGAGCACGAGATGAAGTGTCGACTCCTTCTGGATGTTGTAGTCA 433 Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825 || | || | | ||||| | || || || ||| | || | || || |||||| Sbjct 432 GCAAGAGTCCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTTTGCTGGTCCGGT 373 Query 16826 GGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 || | ||||| || || ||||| ||| || | | | || |||||| | ||| Sbjct 372 GGTATACCCTCCTTATCTTGAATTTTAGCCTTGACGTTGTCGACGGTGTCGGAGCTCTCG 313 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || || || || || |||||||| || |||||||| Sbjct 312 ACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCAT 263 >seq29432 Length=351 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| ||||||| || | ||| |||||||| || || || ||||||||||| ||| Sbjct 112 CCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCC 171 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || |||| || | ||||| || || | || | ||||| || ||| ||| Sbjct 172 AAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAGGG 231 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| || || || ||| || | | | | ||||| || ||| Sbjct 232 ATTCCTTCTTTGTCTTGGATCTTGGC--CTTGACATTGTCGATGGTGTCAGAGGACTCGA 289 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||||||||| || ||||| || ||||| || || |||||||| || Sbjct 290 CCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 341 >seq19370 Length=533 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||||||| || | ||||| || || || ||||| || |||||||||||| Sbjct 212 CCTCCCCTAAGCCTCAGCACAAGGTGCAGTGTAGATTCTTTTTGAATATTGTAGTCGGCC 153 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | ||||| || || | || | || ||| || ||| ||| Sbjct 152 AAGGTACGGCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGG 93 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| ||||| ||| || | | | | ||||||| | ||| Sbjct 92 ATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACC 33 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTT 16920 || | |||||||| || ||||| || ||||| Sbjct 32 TCGAGAGTGATGGTCTTGCCGGTTAGGGTTTT 1 >seq40511 Length=266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || ||||| || || | ||| || || |||||||| || ||||||||||| || Sbjct 212 CCTCCACGGAGCCTGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCG 153 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | ||| || || || |||| |||| ||| |||||| || Sbjct 152 AGAGTTCGGCCGTCCTCGAGTTGCTTTCCGGCGAAAATCAGCCTCTGCTGGTCCGGTGGG 93 Query 16829 ACGCCCTCTTTGTC 16842 | ||||| ||||| Sbjct 92 ATTCCCTCCTTGTC 79 >seq19201 Length=536 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | || |||| || ||||| |||||||| || |||||||| || || Sbjct 279 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCG 338 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||| |||| || || ||||| | || |||||||| || ||| || Sbjct 339 AGTGTCCTTCCGTCTTCCAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGGG 398 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| || | | |||||| | | | | |||||| | || Sbjct 399 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCGGACGATTCAACC 458 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | ||| || || || || || || ||||| ||||| |||||||||||| Sbjct 459 TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTG 509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404774801022610