Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq10281 113 3e-20
seq5051 96.9 2e-15
seq73 96.9 2e-15
seq29432 91.5 1e-13
seq142 86.0 4e-12
>seq10281
Length=966
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | |||||| ||||| ||||| || |||||| || || ||||| |||| |
Sbjct 717 CCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 658
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
||| || |||| || | || ||||| ||||| || | | || ||||| | |||
Sbjct 657 AAAGTCCGGCCGTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGGG 598
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||||||||| ||||| ||||| || | || ||||| || || ||
Sbjct 597 ATGCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCGATGGTATCAGAGCTCTCCACC 538
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || ||||| || || |||||||||||||| || || || |||||
Sbjct 537 TCCAAAGTAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491
Score = 82.4 bits (90), Expect = 5e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | ||| | ||||| || || || ||| || || || ||||| ||||
Sbjct 947 TACCACCACGTAGACGAAGAACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCAG 888
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||| || | || || | || ||||| || || || || || || || || | |
Sbjct 887 CCAATGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTG 828
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||||||||||| ||||| ||| || || | || |||||| ||| || |
Sbjct 827 GGATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTGTCGATAGTATCAGAACTCTCGA 768
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
| || | || || || || ||||| | ||| || ||||| |||||||||
Sbjct 767 CCTCCAGAGTGATGGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCATG 718
>seq5051
Length=1763
Score = 96.9 bits (106), Expect = 2e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| ||||||| |||| |||| |||||||||||||||||||||||| |
Sbjct 243 CTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTC 302
Query 20007 GGTAATATTTAGCCTT 20022
| ||||||||||||
Sbjct 303 GCCCATATTTAGCCTT 318
>seq73
Length=6645612
Score = 96.9 bits (106), Expect = 2e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162
|||||||| | |||||||||| ||||||| |||| ||| | | ||||||| ||| |
Sbjct 5748475 CGCAACACAAGATGAAGAGTGGACTCCTTTGGAATGTTGCAGTTAGACAAAGTGCGTCCA 5748416
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
| || | ||| || || | ||| |||| | ||| ||| | | || | ||||||||
Sbjct 5748415 GCTTCCAGTTGCTTGCCAGAAAAGCTTAGTCTTTGCTGAACAGGAGGAATTCCTTCTTTA 5748356
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282
||| || || ||| ||||| | || ||||| |||||| || | ||||||
Sbjct 5748355 TCCTGGATCTTGGCCTTTACATTGTCCACTGTATCCAAGGGTTCAACCTCGAGAGTAATA 5748296
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
||||| || || | ||| ||| ||| |||||||| ||
Sbjct 5748295 GTTTTCCCAGTAAGAGTTCTCATGAAAATCTGCATCTT 5748258
>seq29432
Length=351
Score = 91.5 bits (100), Expect = 1e-13
Identities = 160/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||| ||||| | | |||||| | |||||| ||| || || || || ||||| ||||
Sbjct 110 TACCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAG 169
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|||| ||| |||| || | |||||||| || || || | || || ||||| | |
Sbjct 170 CCAAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAG 229
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||||||||||| || || ||| ||||| | || || || || |
Sbjct 230 GGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGA 289
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321
| || | || || || || || || | |||||||||||| |||||||| |||
Sbjct 290 CCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTTT 342
>seq142
Length=3748655
Score = 86.0 bits (94), Expect = 4e-12
Identities = 149/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||||| |||||||||||| ||||| ||||||||| |||| ||
Sbjct 2343171 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCTATC 2343112
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| || || || ||||| | || | ||||| ||| | || | |||||||| ||
Sbjct 2343111 TTC--GTTTCTTGCCAGCAAAGCTCAGTCTTTGTTAATCAGGAGGAATTCCTTCTTTATC 2343054
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| | || ||| ||||| | | ||||| |||||| || | || || |
Sbjct 2343053 CTGGGTCTTGGTCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCAAGAGTGATGGA 2342994
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
||| | || | |||||||||||| ||||| || ||
Sbjct 2342993 TTTCCAAGTAAGGGTTTTCACGAAAATCTGTATCTT 2342958
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334688231280809
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |