Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq10281 113 3e-20 seq5051 96.9 2e-15 seq73 96.9 2e-15 seq29432 91.5 1e-13 seq142 86.0 4e-12 >seq10281 Length=966 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | |||||| ||||| ||||| || |||||| || || ||||| |||| | Sbjct 717 CCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 658 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| || |||| || | || ||||| ||||| || | | || ||||| | ||| Sbjct 657 AAAGTCCGGCCGTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGTGGG 598 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||||||| ||||| ||||| || | || ||||| || || || Sbjct 597 ATGCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCGATGGTATCAGAGCTCTCCACC 538 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||| || || |||||||||||||| || || || ||||| Sbjct 537 TCCAAAGTAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| || || || ||| || || || ||||| |||| Sbjct 947 TACCACCACGTAGACGAAGAACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCAG 888 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || ||||| || || || || || || || || | | Sbjct 887 CCAATGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTG 828 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| ||||| ||| || || | || |||||| ||| || | Sbjct 827 GGATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTGTCGATAGTATCAGAACTCTCGA 768 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || | || || || || ||||| | ||| || ||||| ||||||||| Sbjct 767 CCTCCAGAGTGATGGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCATG 718 >seq5051 Length=1763 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||| |||| |||||||||||||||||||||||| | Sbjct 243 CTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTC 302 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 303 GCCCATATTTAGCCTT 318 >seq73 Length=6645612 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 |||||||| | |||||||||| ||||||| |||| ||| | | ||||||| ||| | Sbjct 5748475 CGCAACACAAGATGAAGAGTGGACTCCTTTGGAATGTTGCAGTTAGACAAAGTGCGTCCA 5748416 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 | || | ||| || || | ||| |||| | ||| ||| | | || | |||||||| Sbjct 5748415 GCTTCCAGTTGCTTGCCAGAAAAGCTTAGTCTTTGCTGAACAGGAGGAATTCCTTCTTTA 5748356 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| || || ||| ||||| | || ||||| |||||| || | |||||| Sbjct 5748355 TCCTGGATCTTGGCCTTTACATTGTCCACTGTATCCAAGGGTTCAACCTCGAGAGTAATA 5748296 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||| || || | ||| ||| ||| |||||||| || Sbjct 5748295 GTTTTCCCAGTAAGAGTTCTCATGAAAATCTGCATCTT 5748258 >seq29432 Length=351 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||| | | |||||| | |||||| ||| || || || || ||||| |||| Sbjct 110 TACCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAG 169 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| |||| || | |||||||| || || || | || || ||||| | | Sbjct 170 CCAAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGAG 229 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| || || ||| ||||| | || || || || | Sbjct 230 GGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGA 289 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 | || | || || || || || || | |||||||||||| |||||||| ||| Sbjct 290 CCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCTTT 342 >seq142 Length=3748655 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||||| |||| || Sbjct 2343171 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCTATC 2343112 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || || || || ||||| | || | ||||| ||| | || | |||||||| || Sbjct 2343111 TTC--GTTTCTTGCCAGCAAAGCTCAGTCTTTGTTAATCAGGAGGAATTCCTTCTTTATC 2343054 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | | || ||| ||||| | | ||||| |||||| || | || || | Sbjct 2343053 CTGGGTCTTGGTCTTTACATTTTCTATTGTATCCAAGGGTTCAACCTCAAGAGTGATGGA 2342994 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| | || | |||||||||||| ||||| || || Sbjct 2342993 TTTCCAAGTAAGGGTTTTCACGAAAATCTGTATCTT 2342958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334688231280809