Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq782 233 2e-56
seq93 134 2e-26
seq3 120 4e-22
seq514 102 1e-16
>seq782
Length=486663
Score = 233 bits (258), Expect = 2e-56
Identities = 317/440 (72%), Gaps = 9/440 (2%)
Strand=Plus/Minus
Query 61889 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 61948
|| ||||| || || |||| ||| | |||| ||||| || |||||||| || ||||||
Sbjct 446721 TAATACATACCAGTCTTTAAACCCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTG 446662
Query 61949 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 62008
||| | | | || ||||| |||| ||| || |||||||| ||||| || ||
Sbjct 446661 CCATAGTTAGCA------ATGTGGATGTTCAGAGACTGGCTTTGATCAATGAAAGCACCT 446608
Query 62009 CTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT 62068
|| || || ||||| || | ||| || || || | |||||||| | ||| ||||||| |
Sbjct 446607 CTCTCAGCTGCCATCTTGAGAATGGTTTTCTGAGAGATTTCCCATACAGTCTTATAAAGT 446548
Query 62069 CGCTTAATATCTTCTGGAAGGTTTG-TAT--TCTGAATGGATCCACCATCTGCCATAATC 62125
|||| | || || |||| | || ||| |||| || || ||| ||| ||||||
Sbjct 446547 TGCTTCAAGTCATCAGGAATTTCTGATATGCTCTGGATAGAGCCATTGCATGCAATAATC 446488
Query 62126 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 62185
||| || ||||| |||||||| || ||| | | | || | || | || |||
Sbjct 446487 TGATTTTTCATCTCTTCATTCCACAAGCCCTGCTCAATCAGATCTTTCAGTAAGTGAGGA 446428
Query 62186 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62245
|| || | ||||||||||| ||||| ||||| |||||||| || || |||||| | |||
Sbjct 446427 TTTACAATCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTACATGGT 446368
Query 62246 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62305
|| | |||||||||||||||| || ||||||||||| ||||| ||||| || || |
Sbjct 446367 TCAATGGACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATA 446308
Query 62306 AATAAACTATTTCTAAGACC 62325
| |||||||||||| | |||
Sbjct 446307 AGTAAACTATTTCTTATACC 446288
>seq93
Length=2374459
Score = 134 bits (148), Expect = 2e-26
Identities = 112/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251
|| ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| |
Sbjct 38940 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATATGGTTCAATG 38999
Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311
|||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 39000 GACTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 39059
Query 62312 CTATTTCTAAGACCGTA 62328
|||||||| | ||| ||
Sbjct 39060 CTATTTCTTATACCATA 39076
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126
|| |||||||||||| |||||||| ||||||||||| || | || || || |||| |
Sbjct 52511 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 52570
Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186
|| || || |||||||| ||||| || | ||| || ||| | | || || |||||||
Sbjct 52571 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 52630
Query 63187 CGGTTCCAAGTATATGGC 63204
|| |||||||| || ||
Sbjct 52631 AGGCTCCAAGTAAATAGC 52648
Score = 96.9 bits (106), Expect = 4e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869
|||| || | ||| |||||||||||||| | || || || || ||||| || || | ||
Sbjct 63821 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATTCTTGCTGCCAAAA 63880
Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929
|||| || || || || | ||||| || |||||| |||| || |||| ||| || |
Sbjct 63881 TGGCGTAGTCAGGGTGCTTAGTAGTCAGGGTTGCTGCTGTTTCAGCAGCCAAAGTATCTA 63940
Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975
||| || || || || ||| | |||| |||||||| || |||||
Sbjct 63941 GTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 63986
Score = 91.5 bits (100), Expect = 2e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 62432 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62491
|| || || ||||| || | || || || || ||||| || || || || || || |||
Sbjct 47799 TAGGTTTCATATGGGCCATGCTCCTTGGCCAGATCACAGCTGGCTTCCAAGGCTCCATAA 47858
Query 62492 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551
||||||||||| ||||| | |||||| | || || || | || ||||| |||||
Sbjct 47859 TAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGATAC 47918
Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611
| | |||||||| || ||||| | ||||| || ||||| || || || | ||| |
Sbjct 47919 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACTCCAATTCCAATGGGGCGATGGCGT 47978
Query 62612 TTATTAGA 62619
||||| ||
Sbjct 47979 TTATTTGA 47986
>seq3
Length=9954913
Score = 120 bits (132), Expect = 4e-22
Identities = 99/121 (82%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || |
Sbjct 27230 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 27171
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| ||||| ||||| || ||||| || ||||||||||| |||||||||||||| ||||| |
Sbjct 27170 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCGGCAAAAG 27111
Query 32803 C 32803
|
Sbjct 27110 C 27110
Score = 96.9 bits (106), Expect = 4e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980
|||||||| || |||||||| | ||||||||||| || ||||| |||||||| |||||
Sbjct 25329 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATCTCAGAATGTATGTTTTCCATGGC 25270
Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026
||||| || || ||||| || | || || |||||||| ||||||
Sbjct 25269 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCT 25224
>seq514
Length=1022489
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744
|| ||||| || || | ||| |||||||| |||||||| ||||| || || | || ||
Sbjct 284463 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 284522
Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803
| ||| ||||| | ||||| ||||| || ||||||||||||||||| || ||||||||
Sbjct 284523 AACCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 284581
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633129537744400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |