Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq273 138 1e-27 seq29432 129 5e-25 seq21504 114 1e-20 seq10281 105 6e-18 seq683 104 2e-17 seq19370 102 7e-17 seq188 100 2e-16 seq94 100 2e-16 seq17446 95.1 1e-14 seq377 93.3 4e-14 seq431 89.7 4e-13 seq51 86.0 5e-12 >seq273 Length=4066651 Score = 138 bits (152), Expect = 1e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || ||||| ||||| ||||||||||| ||||||| | || |||||| | Sbjct 887418 ACAATGCAGATCTTTGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCC 887359 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||| |||||| | ||| || ||| |||||||| || || || |||||| Sbjct 887358 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCTGAC 887299 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || |||||||||||||| || ||||| | ||||| || ||| ||| Sbjct 887298 CAGCAGAGGTTGATCTTTGCCGGCAAACAGTTGGAAGACGGACGCACCCTGTCCGACTAC 887239 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || || || ||||| ||||| || || Sbjct 887238 AACATCCAGAAAGAGTCCACTCTGCA 887213 >seq29432 Length=351 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | ||||| || ||||||| |||| || ||||| ||| Sbjct 338 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 279 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| ||||||||||| || || || || | Sbjct 278 GACACCATCGA--CAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGATC 221 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || || || || ||||| | ||||| | || ||| ||| || |||| Sbjct 220 AGCAGCGATTGATCTTCGCTGGAAAACAGCTCGAAGACGGGCGTACTTTGGCTGACTACA 161 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || || |||||||||||||| ||| | ||| | ||||| |||||||| Sbjct 160 ACATCCAGAAAGAATCCACGCTTCATCTTGTGTTGAGGCTCAGAGGAGG 112 >seq21504 Length=484 Score = 114 bits (126), Expect = 1e-20 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || | ||||| ||||||||||| ||| Sbjct 243 ATGCAAATCTTCGTCAAGACCCTTACAGGCAAGACTATCACCCTCGAAGTGGAGAGCTCT 302 Query 25059 GACACTATCGAGTCAC-TG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || | || || |||| |||| ||| ||||| || || || ||||| |||| Sbjct 303 GACACCATTGA-TAACGTGAAAGCCAAAATTCA-GGACAAGGAGGGCATCCCACCGGACC 360 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || || || ||||| || | || |||| ||||||| ||| ||| |||| Sbjct 361 AGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACA 420 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || ||||| || || || || || || Sbjct 421 ACATCCAGAAGGAATCGACCCTTCACTTGGTCCT 454 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || | ||||| |||| |||||| || Sbjct 15 ATGCAGATCTTCGTCAAGACACTCACCGGAAAGACGATCACCCTCGAGGTGGAGAGCTCC 74 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| |||| || || ||||| ||||| || ||||| ||||| Sbjct 75 GACACTATCGACAACGTGAAAACCAAGATACAGGACAAGGAAGGCATCCCACCGGACCAG 134 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || || ||||| || ||| | ||||||| || ||| | | || ||||| Sbjct 135 CAAAGGTTAATCTTCGCCGGAAAGCAACTCGAAGATGGACGAACTCTTGCTGACTACAAC 194 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || ||||| || || || || || || Sbjct 195 ATCCAGAAAGAGTCAACACTTCACTTGGT 223 >seq10281 Length=966 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25014 AAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCA 25073 |||||| | ||||| || | ||||| |||| ||||| |||||||| ||||| Sbjct 50 AAGACTCTCACCGGAAAGACAATCACCCTCGAGGTGGAAAGCTCTGACACCATCGACAAC 109 Query 25074 CTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTT 25133 | || || ||| || || ||||| || || || ||||| ||| || |||| || Sbjct 110 GTTAAAGTCAAGATCCAGGATAAGGAAGGCATCCCGCCGGACCAGCAGAGGCTTATCTTC 169 Query 25134 GCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCC 25193 ||||||||||| | ||||| | || ||| ||| ||| ||||| || || ||||| ||| Sbjct 170 GCCGGCAAACAGCTCGAAGACGGCCGAACTTTGGCCGACTACAACATCCAGAAAGAGTCC 229 Query 25194 ACGCTACATTTAGTGCTAAGGCT 25216 ||||| || || || || ||||| Sbjct 230 ACGCTCCACTTGGTCCTCAGGCT 252 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || ||| ||| Sbjct 719 ATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACCATCACTCTGGAGGTCGAGAGTTCT 778 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || |||||||| | ||| |||||| ||||||||||| || ||||| ||||| Sbjct 779 GATACTATCGACAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCGGACCAG 838 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || || | || |||| |||||| ||| || ||||| Sbjct 839 CAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACATTGGCTGACTACAAC 898 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || || || || || || Sbjct 899 ATCCAGAAAGAGTCGACCCTCCACTTGGTTCT 930 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || ||||| || || | || || | || |||||| ||| Sbjct 491 ATGCAAATCTTTGTTAAAACCTTGACGGGGAAGACGATTACTTTGGAGGTGGAGAGCTCT 550 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| |||| |||||| ||||||||||| || ||||| || || Sbjct 551 GATACCATCGACAACGTGAAAGCCAAAATCCAAGACAAAGAAGGCATCCCACCGGATCAG 610 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || ||||| || || || | ||||| | || ||| ||| || ||||| Sbjct 611 CAGAGATTGATCTTTGCAGGAAAGCAGCTCGAAGACGGCCGGACTTTGGCTGACTACAAC 670 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || || || || ||||| || || || Sbjct 671 ATCCAGAAGGAGTCTACGCTTCACTTGGT 699 >seq683 Length=758919 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || |||| || || |||||||| |||| || || | | Sbjct 117351 ATGCAGATCTTTGTGAAAACCCTGACGGGCAAGACCATCACACTCGAGGTCAAGCCCAGT 117292 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || |||| |||| |||| || ||||| || || || |||||||| Sbjct 117291 GACACTATTGAAAATGTCA---AAGCCAAAATCCAA-GACAAGGAGGGCATCCCACCTGA 117236 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| |||| | |||||||| |||||||| | || |||| |||||| | || || Sbjct 117235 CCAGCAGCATCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTA 117176 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| ||||| || || || ||||| Sbjct 117175 TAACATCCAGAAAGAGTCCACTCTGCACTTGGTGCT 117140 >seq19370 Length=533 Score = 102 bits (112), Expect = 7e-17 Identities = 148/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG---AAG 25079 ||||| || ||||||| |||| || ||| ||||| ||||| || || | | Sbjct 10 ACCGGCAAGACCATCACTCTCGAGGTCGAGAGCAGCGACACCATCGA--CAATGTCAAGG 67 Query 25080 CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGC 25139 | |||| ||| ||||| ||||| || || || || || ||| || | || || ||||| Sbjct 68 CCAAAATTCAA-GACAAGGAAGGCATCCCTCCGGATCAGCAGAGGTTGATCTTCGCCGGA 126 Query 25140 AAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTA 25199 ||||| | || |||| || || ||| ||| |||||||||||||||||||| || || Sbjct 127 AAACAGCTCGAGGATGGCCGTACCTTGGCCGACTACAATATTCAAAAAGAATCTACACTG 186 Query 25200 CATTTAGTGCTAAGGCTAAGAGGAGG 25225 || | ||||| ||||| || ||||| Sbjct 187 CACCTTGTGCTGAGGCTTAGGGGAGG 212 >seq188 Length=3215107 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || |||||||| | || || || | | Sbjct 2830744 ATGCAGATCTTTGTGAAGACCCTAACAGGCAAGACCATCACACTTGAGGTCAAGCCCAAT 2830803 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| ||| | || |||| |||| || |||| || || || ||||||||| Sbjct 2830804 GACACTATTGAG--AATGTCAAAGCTAAAATCCAAA-ACAAGGAGGGCATCCCACCTGAC 2830860 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | |||||||| |||||||| | || |||| |||||| | || || Sbjct 2830861 CAGCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTAT 2830920 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || ||||| ||||| || || | ||||| Sbjct 2830921 AATATCCAGAAAGAGTCCACTCTGCACTCGGTGCT 2830955 >seq94 Length=5588587 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || |||||||| |||| || ||| | | Sbjct 3280253 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACACTCGAGGTCGAGCCCAGT 3280312 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||| ||| | || |||| ||| || |||| || || || ||||||||| Sbjct 3280313 GACACTACTGAG--AATGTCAAAGCTAAAGTCCAAC-ACAAGGAGGGCATCCCACCTGAC 3280369 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | ||||||||||||||||| | || |||| ||||| | || || Sbjct 3280370 CAGCATCGTCTGATTTTTGCCGGCAAACAGATGGAGGATGGCTGCACTCTCTCAGACTAA 3280429 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| | || ||||| ||||| || || || ||||| Sbjct 3280430 AATGTCCAGAAAGAGTCCACTCTGCACTTGGTGCT 3280464 >seq17446 Length=585 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 |||||| ||||||||||| || ||||| || |||||| || | || |||||||| || Sbjct 6 AAAATCCAGGACAAAGAAGGTATACCACCAGATCAACAGAGGCTGATATTTGCCGGAAAG 65 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 ||| | ||||||| || || | | |||||||| ||||| ||||| || || || || Sbjct 66 CAACTGGAAGATGGCCGAACCCTAGCGGATTACAACATTCAGAAAGAGTCTACTCTTCAC 125 Query 25203 TTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || | ||||| ||||| |||| Sbjct 126 CTCGTCTTGAGGCTCAGAGGTGGAA 150 >seq377 Length=1226547 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||| || | ||||| || || | || ||| | | Sbjct 791505 ATGCAGATCTTTGTGAAGACCCCGACGGGCTAGACCATCGCACTCAAGGTCGAGCCCAGT 791564 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||| ||| | || |||| |||| || ||||| ||||| |||||||||||| Sbjct 791565 GACACTACTGAG--AATGTCAAAGCTAAAATCCAA-GACAAGGAAGGCATTCCACCTGAC 791621 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || | | ||||||| |||||||| | || |||| ||||| | | || ||| Sbjct 791622 CAGCAATGTCTGGTTTTTGCAGGCAAACAGCTGGAGGATGGTCGCATTCTCTCAGACTAC 791681 Query 25176 AATATTCAAAAAGAATCCACGCT 25198 ||||| |||| ||| ||||| || Sbjct 791682 AATATGCAAAGAGAGTCCACTCT 791704 >seq431 Length=5665728 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||| || ||||| ||||| |||| || || |||||||| |||| |||||| | | Sbjct 1742569 ATGCCCATCTTTGTGAAGACCCTGACGGGCAAGACCATCACACTCGAGGTGGAGCCCAGT 1742628 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||| ||| | | || || |||| || || || || || || ||||||||||| Sbjct 1742629 GACACTACTGAGAAAGTCAAAGCTAAAACCCAA-GATAAGGAGGGCATCCCACCTGACCA 1742687 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||||||||||||| | || | || ||||| | || || || Sbjct 1742688 GCAGCGTCGGACTTTTGCCGGCAAACAGCTGGAGGTTGTCTGCACTCTCTCAGACTAAAA 1742747 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | | | ||||| ||||| || || || | ||| Sbjct 1742748 TGTCGAGAAAGAGTCCACTCTGCACTTGGAGCT 1742780 >seq51 Length=16196278 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| | || |||||||| | || || ||| | | Sbjct 11819457 ATGCAGATCTTTGTGAAGACCCTGACGGTGAAGACCATCACACTTGAGGTCGAGCCCAGT 11819398 Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||| ||| ||| |||| |||| || ||||| | || || |||||||| Sbjct 11819397 GACACTACTGAGGATGTCA---AAGCTAAAATCCAA-GACAAGGCGGGCATCCCACCTGA 11819342 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | | |||||||| |||||||| | || |||| ||||| | || || Sbjct 11819341 CCAGCAGTGTCTGATTTTTGCAGGCAAACAGCTGGAGGATGGCTGCACTCTCTCAGACTA 11819282 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || | ||| ||||| || || || ||||| Sbjct 11819281 TGATATCCAGAGAGAGTCCACTCTGCACTTGGTGCT 11819246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432992966904785