Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq29432 131 1e-25
seq21504 111 1e-19
seq42717 107 2e-18
seq58060 105 6e-18
seq25626 104 2e-17
seq10281 104 2e-17
seq19370 95.1 1e-14
seq671 87.8 2e-12
seq59367 86.0 5e-12
seq58 84.2 2e-11
seq61295 82.4 6e-11
>seq29432
Length=351
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || | || ||||| || | ||| | ||| |||||||| || |||||||| ||
Sbjct 109 ATACCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCA 168
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| |||||| ||||| || ||||| |||||| |||| | ||||| || ||||||
Sbjct 169 GCCAAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGA 228
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||||||||| ||||| || | | || | |||||| | ||| |||
Sbjct 229 GGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCG 288
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | || |||||||| || ||||| || || ||||||||
Sbjct 289 ACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 338
>seq21504
Length=484
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| || | | || || || | || ||||| || || |||||||| |||
Sbjct 470 ACCACCACGGAGACGAAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGC 411
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| ||| ||| ||| ||||| || || |||||| ||||||||||||| |||||||| ||
Sbjct 410 CAAAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGG 351
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||||| || ||||| ||| || ||| | | |||| |||||| | | || ||
Sbjct 350 GATGCCCTCCTTGTCCTGAATTTTGGCTTTCACGTTATCAATGGTGTCAGAGCTCTCCAC 291
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| | ||| | || ||||| || || || || || || || ||||||
Sbjct 290 TTCGAGGGTGATAGTCTTGCCTGTAAGGGTCTTGACGAAGATTTGCATG 242
>seq42717
Length=256
Score = 107 bits (118), Expect = 2e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || || | ||| | ||||| || || || |||||||||||||| ||
Sbjct 182 ATACCACCACGAAGCCTGAGAACAAGATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCA 123
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||| || ||||||||||||||| || ||| |||| || | ||| || ||||||
Sbjct 122 GCCAAAGTCCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGA 63
Query 114273 GGAATGCCTTCTTTGTC 114289
|| |||||||| |||||
Sbjct 62 GGGATGCCTTCCTTGTC 46
>seq58060
Length=210
Score = 105 bits (116), Expect = 6e-18
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215
|| ||||| || || | ||| || || | || || ||||| ||||||||||| || |
Sbjct 194 CCACCACGGAGCCTGAGAACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCAGCC 135
Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275
| ||| ||| || ||||| || || |||||| ||||||||||||| |||||||| ||
Sbjct 134 AAAGTGCGACCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 75
Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335
|||||||| ||||| ||||| || | | |||| |||||||| | || ||
Sbjct 74 ATGCCTTCCTTGTCCTGGATCTTAGCCTTAACGTTATCAATGGTGTCGGAGCTCTCCACT 15
Query 114336 TCCACGGT 114343
|||| |||
Sbjct 14 TCCAAGGT 7
>seq25626
Length=405
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || || | ||| | ||||| || || || || ||||||||||| |||
Sbjct 359 ATGCCACCACGAAGCCTGAGAACAAGATGTAAAGTCGACTCCTTCTGAATGTTGTAGTCG 300
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || |||||||| || || || ||| |||| | | ||| |||||||||
Sbjct 299 GCTAAGGTGCGGCCGTCTTCAAGCTGCTTCCCGGCGAAGATCAATCTCTGCTGGTCCGGA 240
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| || || ||||| |||||| || | | |||| |||||| | | ||
Sbjct 239 GGAATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTATCAATGGTGTCTGAGCTCTCA 180
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || || ||||| ||||| || ||||| ||||||||
Sbjct 179 ACCTCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCACAAAGATCTGCAT 130
>seq10281
Length=966
Score = 104 bits (114), Expect = 2e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| |||||||| | | ||| || || | || || ||||| || |||||||| ||
Sbjct 948 ATACCACCACGTAGACGAAGAACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCA 889
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || ||| ||| ||||| || || |||||| ||||||||||||| ||||||||
Sbjct 888 GCCAATGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGT 829
Query 114273 GGAATGCCTTCTTTGTC 114289
|| || |||||||||||
Sbjct 828 GGGATACCTTCTTTGTC 812
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | ||| || || || | |||||| || || || |||||||| ||
Sbjct 720 ATGCCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCA 661
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||| || ||||| || || || || || |||| | | ||| || |||||
Sbjct 660 GCCAAAGTCCGGCCGTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGT 601
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| |||||||||||||| || || ||| | | || | ||| || | | ||
Sbjct 600 GGGATGCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCGATGGTATCAGAGCTCTCC 541
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | ||| || || |||| ||||| ||||| || |||||
Sbjct 540 ACCTCCAAAGTAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491
>seq19370
Length=533
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || | || |||| || | || | ||||||||||||||||| ||||| |||
Sbjct 215 ATACCTCCCCTAAGCCTCAGCACAAGGTGCAGTGTAGATTCTTTTTGAATATTGTAGTCG 156
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||||| ||| || || ||||| || ||| |||| | | ||| || ||||||
Sbjct 155 GCCAAGGTACGGCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGA 96
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| |||||||| ||||| ||| || || | | || | ||||||| || |||
Sbjct 95 GGGATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCG 36
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTT 114367
|| || | || | || |||||||| || |||||
Sbjct 35 ACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTT 1
>seq671
Length=818080
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211
|| ||| |||| |||||||| || | ||| | || || || |||||||||||||| ||
Sbjct 168646 AACACCATCACGAAGTCTCAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC 168587
Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271
|| ||||| ||||||| || || || ||||| |||| || | || || | ||
Sbjct 168586 AGACAAAGTACATCAATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGAGCAGG 168527
Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331
|||||| ||||| || || |||| |||| | ||| | || | | || |||
Sbjct 168526 AGGAATTCCTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTATTGTACCCGAGGGTTC 168467
Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | || || || || || ||||| || |||| ||||||
Sbjct 168466 AACCTCAAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAAGCTGCAT 168416
>seq59367
Length=207
Score = 86.0 bits (94), Expect = 5e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || || | ||| | ||||| || || || ||||| |||||||| |||
Sbjct 161 ATGCCACCACGAAGCCTGAGAACGAGATGTAAAGTCGACTCCTTTTGGATGTTGTAGTCG 102
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||| | |||||||||||||| || ||| ||||||| | ||| || |||||
Sbjct 101 GCCAAAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGT 42
Query 114273 GGAATGCCTTCTTTGTC 114289
|| || ||||| || ||
Sbjct 41 GGGATACCTTCCTTATC 25
>seq58
Length=4472761
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/228 (68%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| |||||||| || | ||| | || || || ||| |||||||||| ||
Sbjct 4394498 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTGGAATGTTGTAGTCAGA 4394557
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| || || | |||| | ||| || ||||| || | || | || || | ||||
Sbjct 4394558 CA--GTGCGTCCAGCTTCCACTTGCTTGCCAGCAAAGCTCAGTCTTTGCTGAGCAGGAGC 4394615
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| || || |||||| |||| | ||| | || || || ||| ||
Sbjct 4394616 AATTCCTTCCTTATCCTGGATCTTTGTCTTTATATTTTCTATTGTATCCAAGGGTTCAAC 4394675
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | ||| | ||||| || || || ||||| ||||||||||||||
Sbjct 4394676 CTCGAGGGTGATAGTTTTCCCAGTAAGGGTTTTCACAAAAATCTGCAT 4394723
>seq61295
Length=203
Score = 82.4 bits (90), Expect = 6e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287
|||||||| || || || ||| |||| | | ||| |||||||||||||| || || |||
Sbjct 191 TCTTCAAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCCTTG 132
Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347
|| ||||| || | | |||| |||||||| | || || |||| || |
Sbjct 131 TCCTGGATCTTGGCCTTGACGTTATCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAATG 72
Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || ||||| ||||| || ||||| ||||||||
Sbjct 71 GTCTTTCCGGTGAGAGTCTTCACAAAGATCTGCAT 37
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419809567705668
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |