Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq29432 131 1e-25 seq21504 111 1e-19 seq42717 107 2e-18 seq58060 105 6e-18 seq25626 104 2e-17 seq10281 104 2e-17 seq19370 95.1 1e-14 seq671 87.8 2e-12 seq59367 86.0 5e-12 seq58 84.2 2e-11 seq61295 82.4 6e-11 >seq29432 Length=351 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || ||||| || | ||| | ||| |||||||| || |||||||| || Sbjct 109 ATACCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCA 168 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| ||||| || ||||| |||||| |||| | ||||| || |||||| Sbjct 169 GCCAAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGATCCGGA 228 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| ||||| || | | || | |||||| | ||| ||| Sbjct 229 GGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCG 288 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||| || ||||| || || |||||||| Sbjct 289 ACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 338 >seq21504 Length=484 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || || || | || ||||| || || |||||||| ||| Sbjct 470 ACCACCACGGAGACGAAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGC 411 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||| ||| ||| ||||| || || |||||| ||||||||||||| |||||||| || Sbjct 410 CAAAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGG 351 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||||| || ||||| ||| || ||| | | |||| |||||| | | || || Sbjct 350 GATGCCCTCCTTGTCCTGAATTTTGGCTTTCACGTTATCAATGGTGTCAGAGCTCTCCAC 291 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | ||| | || ||||| || || || || || || || |||||| Sbjct 290 TTCGAGGGTGATAGTCTTGCCTGTAAGGGTCTTGACGAAGATTTGCATG 242 >seq42717 Length=256 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || || | ||| | ||||| || || || |||||||||||||| || Sbjct 182 ATACCACCACGAAGCCTGAGAACAAGATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCA 123 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || ||||||||||||||| || ||| |||| || | ||| || |||||| Sbjct 122 GCCAAAGTCCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGA 63 Query 114273 GGAATGCCTTCTTTGTC 114289 || |||||||| ||||| Sbjct 62 GGGATGCCTTCCTTGTC 46 >seq58060 Length=210 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || || | ||| || || | || || ||||| ||||||||||| || | Sbjct 194 CCACCACGGAGCCTGAGAACCAAGTGAAGGGTCGACTCTTTCTGAATGTTGTAGTCAGCC 135 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||| ||| || ||||| || || |||||| ||||||||||||| |||||||| || Sbjct 134 AAAGTGCGACCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG 75 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 |||||||| ||||| ||||| || | | |||| |||||||| | || || Sbjct 74 ATGCCTTCCTTGTCCTGGATCTTAGCCTTAACGTTATCAATGGTGTCGGAGCTCTCCACT 15 Query 114336 TCCACGGT 114343 |||| ||| Sbjct 14 TCCAAGGT 7 >seq25626 Length=405 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || || | ||| | ||||| || || || || ||||||||||| ||| Sbjct 359 ATGCCACCACGAAGCCTGAGAACAAGATGTAAAGTCGACTCCTTCTGAATGTTGTAGTCG 300 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||||| || || || ||| |||| | | ||| ||||||||| Sbjct 299 GCTAAGGTGCGGCCGTCTTCAAGCTGCTTCCCGGCGAAGATCAATCTCTGCTGGTCCGGA 240 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| |||||| || | | |||| |||||| | | || Sbjct 239 GGAATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTATCAATGGTGTCTGAGCTCTCA 180 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || ||||| ||||| || ||||| |||||||| Sbjct 179 ACCTCCAAAGTAATAGTCTTTCCGGTGAGAGTCTTCACAAAGATCTGCAT 130 >seq10281 Length=966 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| |||||||| | | ||| || || | || || ||||| || |||||||| || Sbjct 948 ATACCACCACGTAGACGAAGAACCAAGTGGAGGGTCGACTCTTTCTGGATGTTGTAGTCA 889 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| ||| ||||| || || |||||| ||||||||||||| |||||||| Sbjct 888 GCCAATGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGT 829 Query 114273 GGAATGCCTTCTTTGTC 114289 || || ||||||||||| Sbjct 828 GGGATACCTTCTTTGTC 812 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||| || || || | |||||| || || || |||||||| || Sbjct 720 ATGCCACCACGGAGACGCAAGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCA 661 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || ||||| || || || || || |||| | | ||| || ||||| Sbjct 660 GCCAAAGTCCGGCCGTCTTCGAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCCGGT 601 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||||||||| || || ||| | | || | ||| || | | || Sbjct 600 GGGATGCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCGATGGTATCAGAGCTCTCC 541 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||| || || |||| ||||| ||||| || ||||| Sbjct 540 ACCTCCAAAGTAATCGTCTTCCCCGTCAAGGTTTTAACAAAGATTTGCAT 491 >seq19370 Length=533 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || |||| || | || | ||||||||||||||||| ||||| ||| Sbjct 215 ATACCTCCCCTAAGCCTCAGCACAAGGTGCAGTGTAGATTCTTTTTGAATATTGTAGTCG 156 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| ||| || || ||||| || ||| |||| | | ||| || |||||| Sbjct 155 GCCAAGGTACGGCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGA 96 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| ||| || || | | || | ||||||| || ||| Sbjct 95 GGGATGCCTTCCTTGTCTTGAATTTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCG 36 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTT 114367 || || | || | || |||||||| || ||||| Sbjct 35 ACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTT 1 >seq671 Length=818080 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114152 AATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 || ||| |||| |||||||| || | ||| | || || || |||||||||||||| || Sbjct 168646 AACACCATCACGAAGTCTCAACACCAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTC 168587 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 || ||||| ||||||| || || || ||||| |||| || | || || | || Sbjct 168586 AGACAAAGTACATCAATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGAGCAGG 168527 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 |||||| ||||| || || |||| |||| | ||| | || | | || ||| Sbjct 168526 AGGAATTCCTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTATTGTACCCGAGGGTTC 168467 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || || ||||| || |||| |||||| Sbjct 168466 AACCTCAAGGGTGATGGTCTTCCCAGTAAGGGTTTTCACGAAAAGCTGCAT 168416 >seq59367 Length=207 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || || | ||| | ||||| || || || ||||| |||||||| ||| Sbjct 161 ATGCCACCACGAAGCCTGAGAACGAGATGTAAAGTCGACTCCTTTTGGATGTTGTAGTCG 102 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| | |||||||||||||| || ||| ||||||| | ||| || ||||| Sbjct 101 GCCAAAGTTCTGCCGTCTTCAAGTTGTTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGT 42 Query 114273 GGAATGCCTTCTTTGTC 114289 || || ||||| || || Sbjct 41 GGGATACCTTCCTTATC 25 >seq58 Length=4472761 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | || || || ||| |||||||||| || Sbjct 4394498 ACCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTGGAATGTTGTAGTCAGA 4394557 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || | |||| | ||| || ||||| || | || | || || | |||| Sbjct 4394558 CA--GTGCGTCCAGCTTCCACTTGCTTGCCAGCAAAGCTCAGTCTTTGCTGAGCAGGAGC 4394615 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || |||||| |||| | ||| | || || || ||| || Sbjct 4394616 AATTCCTTCCTTATCCTGGATCTTTGTCTTTATATTTTCTATTGTATCCAAGGGTTCAAC 4394675 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||||| || || || ||||| |||||||||||||| Sbjct 4394676 CTCGAGGGTGATAGTTTTCCCAGTAAGGGTTTTCACAAAAATCTGCAT 4394723 >seq61295 Length=203 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 |||||||| || || || ||| |||| | | ||| |||||||||||||| || || ||| Sbjct 191 TCTTCAAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCCTTG 132 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | |||| |||||||| | || || |||| || | Sbjct 131 TCCTGGATCTTGGCCTTGACGTTATCAATGGTGTCGGAGCTCTCCACCTCCAAAGTAATG 72 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || ||||| ||||| || ||||| |||||||| Sbjct 71 GTCTTTCCGGTGAGAGTCTTCACAAAGATCTGCAT 37 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419809567705668