Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq17663 118 2e-21
seq514 84.2 4e-11
>seq17663
Length=579
Score = 118 bits (130), Expect = 2e-21
Identities = 249/364 (68%), Gaps = 7/364 (2%)
Strand=Plus/Minus
Query 42500 TGAGGCGCGCTGCTT-CTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGT 42558
|||||| || ||||| ||| || || || || ||||| |||||| | || || ||| |||
Sbjct 567 TGAGGCTCG-TGCTTTCTATGGGTTTCAAATTGCCATGGAGAACATTCATTCGGAGATGT 509
Query 42559 ACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGG 42618
|| | |||| || | || | || |||| | ||| | | |||||||| |
Sbjct 508 ACAGCCAACTTCTGGAGACATTTATAAAGGATTCGCAGGAGAAGGATAGACTGTTCAATG 449
Query 42619 CCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGA 42678
| || ||||| || || ||||| |||||||| | ||| | | ||||| | |
Sbjct 448 CTATCGAGACCATTCCTTGCATTTCCAAGAAGGCAAAATGGTGTTTAGATTGGATTCAAA 389
Query 42679 GTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCT 42738
|||| | | | || | | ||||||||| || ||| | |||||| || |||||||
Sbjct 388 GTCCT-ATGT--CTTTTGCTGTGAGGCTGGTTGCTTTTGCATGCGTCGAAGGAATCTTCT 332
Query 42739 TCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTC 42797
||||||| ||| ||||||||||||| ||| ||| |||| | ||||| || |
Sbjct 331 TCTCGGGAAGCTTTTGTGCCATCTTCTGGCTTAAGAAGAGAGGTCT-TATGCCGGGTTTG 273
Query 42798 ACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTC 42857
|| ||||| ||||| || || ||| || |||||||| || | |||||||| || |||
Sbjct 272 ACTTTCTCAAACGAGCTTATATCCAGAGATGAGGGGCTTCACTGTGACTTTGCTTGTCTC 213
Query 42858 CTGT 42861
|||
Sbjct 212 TTGT 209
>seq514
Length=1022489
Score = 84.2 bits (92), Expect = 4e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755
|| || ||| |||| |||||| | || || || || || ||||||||||| | || ||
Sbjct 284596 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 284537
Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814
| || |||||| | ||| | | |||| | ||||| |||||||| || || || |||||
Sbjct 284536 GCTATATTCTGGTTAAAGAAAAGAGGTCTT-ATGCCTGGACTCACTTTTTCCAATGAACT 284478
Query 42815 CATCAGCAGGGACGA 42829
||||||||| || ||
Sbjct 284477 CATCAGCAGAGATGA 284463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 943590350818640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |