Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq17663 118 2e-21 seq514 84.2 4e-11 >seq17663 Length=579 Score = 118 bits (130), Expect = 2e-21 Identities = 249/364 (68%), Gaps = 7/364 (2%) Strand=Plus/Minus Query 42500 TGAGGCGCGCTGCTT-CTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGT 42558 |||||| || ||||| ||| || || || || ||||| |||||| | || || ||| ||| Sbjct 567 TGAGGCTCG-TGCTTTCTATGGGTTTCAAATTGCCATGGAGAACATTCATTCGGAGATGT 509 Query 42559 ACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGG 42618 || | |||| || | || | || |||| | ||| | | |||||||| | Sbjct 508 ACAGCCAACTTCTGGAGACATTTATAAAGGATTCGCAGGAGAAGGATAGACTGTTCAATG 449 Query 42619 CCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGA 42678 | || ||||| || || ||||| |||||||| | ||| | | ||||| | | Sbjct 448 CTATCGAGACCATTCCTTGCATTTCCAAGAAGGCAAAATGGTGTTTAGATTGGATTCAAA 389 Query 42679 GTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCT 42738 |||| | | | || | | ||||||||| || ||| | |||||| || ||||||| Sbjct 388 GTCCT-ATGT--CTTTTGCTGTGAGGCTGGTTGCTTTTGCATGCGTCGAAGGAATCTTCT 332 Query 42739 TCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTC 42797 ||||||| ||| ||||||||||||| ||| ||| |||| | ||||| || | Sbjct 331 TCTCGGGAAGCTTTTGTGCCATCTTCTGGCTTAAGAAGAGAGGTCT-TATGCCGGGTTTG 273 Query 42798 ACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTC 42857 || ||||| ||||| || || ||| || |||||||| || | |||||||| || ||| Sbjct 272 ACTTTCTCAAACGAGCTTATATCCAGAGATGAGGGGCTTCACTGTGACTTTGCTTGTCTC 213 Query 42858 CTGT 42861 ||| Sbjct 212 TTGT 209 >seq514 Length=1022489 Score = 84.2 bits (92), Expect = 4e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || || ||| |||| |||||| | || || || || || ||||||||||| | || || Sbjct 284596 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 284537 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || |||||| | ||| | | |||| | ||||| |||||||| || || || ||||| Sbjct 284536 GCTATATTCTGGTTAAAGAAAAGAGGTCTT-ATGCCTGGACTCACTTTTTCCAATGAACT 284478 Query 42815 CATCAGCAGGGACGA 42829 ||||||||| || || Sbjct 284477 CATCAGCAGAGATGA 284463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943590350818640