Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq7730 138 1e-27
seq170 100 3e-16
>seq7730
Length=1237
Score = 138 bits (152), Expect = 1e-27
Identities = 230/330 (70%), Gaps = 8/330 (2%)
Strand=Plus/Minus
Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305
|||||||| || || | || | ||||| || |||||||||||| || || || | |
Sbjct 830 ACATGAGCGAGGATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAGA 771
Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365
||||| || | || | |||||||| ||||| |||||||| || | | ||||||||
Sbjct 770 CCCATATCGGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTTGTAACATAAAAC 711
Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425
|| |||| ||| || || ||||| ||||||||| | ||| | || ||||| ||
Sbjct 710 TGCGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTAAGGTCAGAAGGATTCCAAGCC 651
Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGA 20481
|||| || || | || ||| | ||||| || || || | ||| ||| | |||
Sbjct 650 GACATTATTATCCGTCGATCATCAGGATTGTTCTTGATCTTGTTAAT-TACA---TCCGA 595
Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAA 20541
| || ||||| || ||||| ||||| ||||||| | || |||| || |||||
Sbjct 594 GAGCTGATCAAATCCTTGGCCAGTATAATCAGCATGCATATCTGTGTACTTAGCACCAAA 535
Query 20542 GTGCCTCCACTGGAAACCGTAAACAGGTCC 20571
||| ||||| || || || ||||| |||||
Sbjct 534 GTGTCTCCATTGAAATCCATAAACGGGTCC 505
>seq170
Length=9568404
Score = 100 bits (110), Expect = 3e-16
Identities = 91/115 (79%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296
|| ||||| | || || | ||| || || | ||||| |||||||| ||||| || ||
Sbjct 9399134 AGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 9399075
Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGT 20351
|| |||| ||||||||| | ||||||||||||||||| ||||| ||||||||||
Sbjct 9399074 ACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCACCGT 9399020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441022796886760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |