Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq7730 138 1e-27 seq170 100 3e-16 >seq7730 Length=1237 Score = 138 bits (152), Expect = 1e-27 Identities = 230/330 (70%), Gaps = 8/330 (2%) Strand=Plus/Minus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 |||||||| || || | || | ||||| || |||||||||||| || || || | | Sbjct 830 ACATGAGCGAGGATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAGA 771 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| || | || | |||||||| ||||| |||||||| || | | |||||||| Sbjct 770 CCCATATCGGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTTGTAACATAAAAC 711 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| ||| || || ||||| ||||||||| | ||| | || ||||| || Sbjct 710 TGCGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTAAGGTCAGAAGGATTCCAAGCC 651 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGA 20481 |||| || || | || ||| | ||||| || || || | ||| ||| | ||| Sbjct 650 GACATTATTATCCGTCGATCATCAGGATTGTTCTTGATCTTGTTAAT-TACA---TCCGA 595 Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAA 20541 | || ||||| || ||||| ||||| ||||||| | || |||| || ||||| Sbjct 594 GAGCTGATCAAATCCTTGGCCAGTATAATCAGCATGCATATCTGTGTACTTAGCACCAAA 535 Query 20542 GTGCCTCCACTGGAAACCGTAAACAGGTCC 20571 ||| ||||| || || || ||||| ||||| Sbjct 534 GTGTCTCCATTGAAATCCATAAACGGGTCC 505 >seq170 Length=9568404 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || ||||| | || || | ||| || || | ||||| |||||||| ||||| || || Sbjct 9399134 AGGCCAGTGATGTGCGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGC 9399075 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGT 20351 || |||| ||||||||| | ||||||||||||||||| ||||| |||||||||| Sbjct 9399074 ACCCCCAGGCCCATGTCTGCTGACCTCTGATACAGCTGGCAGGACAGCTCACCGT 9399020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441022796886760