Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq19201 105 5e-18 seq29432 98.7 8e-16 seq17446 82.4 6e-11 seq273 82.4 6e-11 >seq19201 Length=536 Score = 105 bits (116), Expect = 5e-18 Identities = 167/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || || |||| |||||||| ||||||||| ||||||||||| | | Sbjct 279 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCG-C 337 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | |||| | |||| |||| ||||| || || |||||||| |||||||||||| || Sbjct 338 GAGTGTCCTTCCGTCTTCCAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGG 397 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTC 34076 | | || |||||| || || ||| || | || | | || | ||||| Sbjct 398 GATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTG---TCGATCGTGTCGGACGATTC 454 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || | ||||| || || || ||||| |||||||||||||| |||||||| Sbjct 455 AACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 508 >seq29432 Length=351 Score = 98.7 bits (108), Expect = 8e-16 Identities = 170/243 (70%), Gaps = 7/243 (3%) Strand=Plus/Plus Query 33892 CAATCGAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTG 33951 |||| || ||||||||| |||| || ||| |||||||||||| || ||||| |||||| Sbjct 104 CAAT-GATACCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTG 162 Query 33952 TAATCTGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGA 34011 || || ||||| ||| |||| || | || || || || || |||| ||||||||| Sbjct 163 TAGTCAGCCAAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGA 222 Query 34012 TCCACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCA 34068 ||| || | | |||||||| || || ||| || | || | | ||| Sbjct 223 TCCGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTG---TCGATGGTGTCA 279 Query 34069 GTAGATTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 | || ||| |||| || || || || |||||||| |||||||| ||||| ||||| Sbjct 280 GAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATC 339 Query 34129 TTT 34131 ||| Sbjct 340 TTT 342 >seq17446 Length=585 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| |||| || || || ||||| || ||| ||||||||||||||||| || Sbjct 148 CCACCTCTGAGCCTCAAGACGAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCCGCT 89 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| | || |||| |||||| |||||||||||||| | ||| ||||| Sbjct 88 AGGGTTCGGCCATCTTCCAGTTGCTTTCCGGCAAATATCAGCCTCTGTTGATC 36 >seq273 Length=4066651 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 || |||||| |||| ||||| ||||| || || ||| ||| ||||| |||||||| || Sbjct 887185 GACACCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 887244 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 | || || |||| ||||| || ||||||||||| |||| | |||||| || Sbjct 887245 GGACAGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGG 887304 Query 34017 CGGCACGCTCTCTTTGTC 34034 || | || ||||||||| Sbjct 887305 GGGGATGCCCTCTTTGTC 887322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396755406118078