Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq19201 105 5e-18
seq29432 98.7 8e-16
seq17446 82.4 6e-11
seq273 82.4 6e-11
>seq19201
Length=536
Score = 105 bits (116), Expect = 5e-18
Identities = 167/234 (71%), Gaps = 8/234 (3%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||||||||| || || |||| |||||||| ||||||||| ||||||||||| | |
Sbjct 279 CCTCCTCTCAGACGGAGAACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCG-C 337
Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| |||| | |||| |||| ||||| || || |||||||| |||||||||||| ||
Sbjct 338 GAGTGTCCTTCCGTCTTCCAGCTGCTTCCCCGCGAATATCAGCCGCTGCTGATCCGGTGG 397
Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTC 34076
| | || |||||| || || ||| || | || | | || | |||||
Sbjct 398 GATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTG---TCGATCGTGTCGGACGATTC 454
Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130
|| | ||||| || || || ||||| |||||||||||||| ||||||||
Sbjct 455 AACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 508
>seq29432
Length=351
Score = 98.7 bits (108), Expect = 8e-16
Identities = 170/243 (70%), Gaps = 7/243 (3%)
Strand=Plus/Plus
Query 33892 CAATCGAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTG 33951
|||| || ||||||||| |||| || ||| |||||||||||| || ||||| ||||||
Sbjct 104 CAAT-GATACCTCCTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTG 162
Query 33952 TAATCTGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGA 34011
|| || ||||| ||| |||| || | || || || || || |||| |||||||||
Sbjct 163 TAGTCAGCCAAAGTACGCCCGTCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGCTGA 222
Query 34012 TCCACCGGCACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCA 34068
||| || | | |||||||| || || ||| || | || | | |||
Sbjct 223 TCCGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTG---TCGATGGTGTCA 279
Query 34069 GTAGATTCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128
| || ||| |||| || || || || |||||||| |||||||| ||||| |||||
Sbjct 280 GAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCATC 339
Query 34129 TTT 34131
|||
Sbjct 340 TTT 342
>seq17446
Length=585
Score = 82.4 bits (90), Expect = 6e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| ||||| |||| || || || ||||| || ||| ||||||||||||||||| ||
Sbjct 148 CCACCTCTGAGCCTCAAGACGAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAATCCGCT 89
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013
| ||| | || |||| |||||| |||||||||||||| | ||| |||||
Sbjct 88 AGGGTTCGGCCATCTTCCAGTTGCTTTCCGGCAAATATCAGCCTCTGTTGATC 36
>seq273
Length=4066651
Score = 82.4 bits (90), Expect = 6e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956
|| |||||| |||| ||||| ||||| || || ||| ||| ||||| |||||||| ||
Sbjct 887185 GACACCTCCCCTCAAGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 887244
Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016
| || || |||| ||||| || ||||||||||| |||| | |||||| ||
Sbjct 887245 GGACAGGGTGCGTCCGTCTTCCAACTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGG 887304
Query 34017 CGGCACGCTCTCTTTGTC 34034
|| | || |||||||||
Sbjct 887305 GGGGATGCCCTCTTTGTC 887322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396755406118078
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |