Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04]
63,439 sequences; 2,073,344,508 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq7338 109 7e-19
seq17663 102 1e-16
>seq7338
Length=1293
Score = 109 bits (120), Expect = 7e-19
Identities = 212/310 (68%), Gaps = 11/310 (4%)
Strand=Plus/Plus
Query 8649 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTCA 8708
|||||| ||||| |||| ||||| || || || ||| || | |||||||||||||||
Sbjct 569 AATTACAGAGAAGCCTACGGTCTTTTCGCCTGTAACGGAATCTTGTTCAACCACGAGTCA 628
Query 8709 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-----CGATGGTATCAAACAAA 8763
|| |||||||| | | |||||||| | ||||||||| || ||| | | |||
Sbjct 629 CCTCGTCGTGGAGAGAACTTCGTGACCAGGAAGATCACGAGAGCGTTGGGAAGGATCAA- 687
Query 8764 TCGTCGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGG 8823
|| | | ||||| || || | | ||||| ||| | || ||| || ||||
Sbjct 688 -GGTTGGTCTTCAGAGGAAGCTCTT---CCTTGGGAATCTCCAGGCGTCGAGAGATTGGG 743
Query 8824 GACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACG 8883
|| ||| ||| || || || || ||||||||| | | || ||||| || | ||||
Sbjct 744 GATTCGCTGGGGATTACGTGGAGGCAATGTGGCTCATGTTGCAGCAAGAGAAGCCAGACG 803
Query 8884 AATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAGTTGTGCTTTA 8943
| || || || ||||||| ||| ||||| | || |||||| ||||| | | | ||
Sbjct 804 ATTACGTTGTGGCGACGGAGGAATCACACACTGTTGAGGAGTTTCTTGAGGT-TTCGTTT 862
Query 8944 GGGAAGTTGG 8953
||| | ||||
Sbjct 863 GGGTACTTGG 872
>seq17663
Length=579
Score = 102 bits (112), Expect = 1e-16
Identities = 204/296 (69%), Gaps = 6/296 (2%)
Strand=Plus/Plus
Query 125915 GAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCC 125974
|||||||| || || || | |||||| || || | ||| ||| | |||||||||||
Sbjct 88 GAGTTCATTCCAATAAGATCACATGGAAGGGCCTTGCAGACAAACTCTGTCTCAATTTCC 147
Query 125975 ACGGCTTCCCGCACGATGGCGTGAATGGTGTCCACCCC-AGGT-CTATTGC-GCAAAGTC 126031
|| || || | || || | || | ||||| || | || ||| ||||| |
Sbjct 148 ACTGCCTCATGAACAATCTGATAAACTTTCTCCACAGGGAGCTGCTTCTGCAGCAAACTG 207
Query 126032 TTGAAGAGTTCCACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTC 126091
| ||||| || | |||| || ||| || ||||| || | ||| || || || ||
Sbjct 208 TACAAGAGA--CAAG-CAAAGTCACAGTGAAGCCCCTCATCTCTGGATATAAGCTCGTTT 264
Query 126092 GAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAA 126151
||||| || || ||||| ||||| | |||||| | |||||| || ||||||||
Sbjct 265 GAGAAAGTCAAACCCGGCATAAGACCTCTCTTCTTAAGCCAGAAGATGGCACAAAAGCTT 324
Query 126152 CCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207
||||||||||||||||| || || || || || |||| || | | ||||||| ||
Sbjct 325 CCCGAGAAGAAGATTCCTTCGACGCATGCAAAAGCAACCAGCCTCACAGCAAAAGA 380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596879906062120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |