Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinolophus_20sinicus_20[refseq_20GCF_5F001888835.1_202016-12-04] 63,439 sequences; 2,073,344,508 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq7338 109 7e-19 seq17663 102 1e-16 >seq7338 Length=1293 Score = 109 bits (120), Expect = 7e-19 Identities = 212/310 (68%), Gaps = 11/310 (4%) Strand=Plus/Plus Query 8649 AATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTCA 8708 |||||| ||||| |||| ||||| || || || ||| || | ||||||||||||||| Sbjct 569 AATTACAGAGAAGCCTACGGTCTTTTCGCCTGTAACGGAATCTTGTTCAACCACGAGTCA 628 Query 8709 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-----CGATGGTATCAAACAAA 8763 || |||||||| | | |||||||| | ||||||||| || ||| | | ||| Sbjct 629 CCTCGTCGTGGAGAGAACTTCGTGACCAGGAAGATCACGAGAGCGTTGGGAAGGATCAA- 687 Query 8764 TCGTCGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGG 8823 || | | ||||| || || | | ||||| ||| | || ||| || |||| Sbjct 688 -GGTTGGTCTTCAGAGGAAGCTCTT---CCTTGGGAATCTCCAGGCGTCGAGAGATTGGG 743 Query 8824 GACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACG 8883 || ||| ||| || || || || ||||||||| | | || ||||| || | |||| Sbjct 744 GATTCGCTGGGGATTACGTGGAGGCAATGTGGCTCATGTTGCAGCAAGAGAAGCCAGACG 803 Query 8884 AATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAGTTGTGCTTTA 8943 | || || || ||||||| ||| ||||| | || |||||| ||||| | | | || Sbjct 804 ATTACGTTGTGGCGACGGAGGAATCACACACTGTTGAGGAGTTTCTTGAGGT-TTCGTTT 862 Query 8944 GGGAAGTTGG 8953 ||| | |||| Sbjct 863 GGGTACTTGG 872 >seq17663 Length=579 Score = 102 bits (112), Expect = 1e-16 Identities = 204/296 (69%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 125915 GAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCC 125974 |||||||| || || || | |||||| || || | ||| ||| | ||||||||||| Sbjct 88 GAGTTCATTCCAATAAGATCACATGGAAGGGCCTTGCAGACAAACTCTGTCTCAATTTCC 147 Query 125975 ACGGCTTCCCGCACGATGGCGTGAATGGTGTCCACCCC-AGGT-CTATTGC-GCAAAGTC 126031 || || || | || || | || | ||||| || | || ||| ||||| | Sbjct 148 ACTGCCTCATGAACAATCTGATAAACTTTCTCCACAGGGAGCTGCTTCTGCAGCAAACTG 207 Query 126032 TTGAAGAGTTCCACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTC 126091 | ||||| || | |||| || ||| || ||||| || | ||| || || || || Sbjct 208 TACAAGAGA--CAAG-CAAAGTCACAGTGAAGCCCCTCATCTCTGGATATAAGCTCGTTT 264 Query 126092 GAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAA 126151 ||||| || || ||||| ||||| | |||||| | |||||| || |||||||| Sbjct 265 GAGAAAGTCAAACCCGGCATAAGACCTCTCTTCTTAAGCCAGAAGATGGCACAAAAGCTT 324 Query 126152 CCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 ||||||||||||||||| || || || || || |||| || | | ||||||| || Sbjct 325 CCCGAGAAGAAGATTCCTTCGACGCATGCAAAAGCAACCAGCCTCACAGCAAAAGA 380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596879906062120